PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ciclev10011603m | ||||||||
Common Name | CICLE_v10011603mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | MYB_related | ||||||||
Protein Properties | Length: 487aa MW: 54201 Da PI: 7.6947 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 24.2 | 7.6e-08 | 359 | 406 | 4 | 48 |
S-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 WT E +l+d++ q+G g W+ I r + +Rt+ +++++w+++l Ciclev10011603m 359 WTLSEVMKLIDGISQFGVGKWTDIKRLLFsssSHRTPIDLRDKWRNLL 406 **********************************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.1E-11 | 348 | 413 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 13.847 | 351 | 410 | IPR017930 | Myb domain |
SMART | SM00717 | 2.5E-8 | 355 | 408 | IPR001005 | SANT/Myb domain |
CDD | cd11660 | 1.08E-17 | 357 | 407 | No hit | No description |
SuperFamily | SSF46689 | 4.71E-16 | 357 | 416 | IPR009057 | Homeodomain-like |
Pfam | PF13921 | 3.8E-6 | 359 | 413 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 487 aa Download sequence Send to blast |
MDKGPLLLEN VRNMTSQRVK VEESFVPAFK DKAAEVSNLL AEPKCDHASV DGVLSFGREN 60 LGKSSGMDGF SYEFEFGFRT NCGGLDSFTT QGEDDLKLEV LDGLLDDIDE VDDFHAANDL 120 STVCDDFLLD IEFTEKVAKF DCGPVEGSHL GNSSSESHSP GASGSNVAVG MSDSSITALE 180 SECKNDSLEK MVNCELHGTF KSKCEYQAPD MEKCPSSHDM DRFDELDSDD NVLLSSILSK 240 CKKRVKSTVL GTKVKRLRKP TKRYIEESSD LKPGSLMRGQ NVSTATLKDK HPKVTPCNGS 300 SKGSQVASES WLRGGRLKKR SPILGFESDD DIFSSDSDDD RVRKRKSKID DRRKNQRMWT 360 LSEVMKLIDG ISQFGVGKWT DIKRLLFSSS SHRTPIDLRD KWRNLLRASY AHQKNKGEVD 420 PKHAMRSLPK PVLCRIRELA TIHPYPRVPY SKKCNGDTDS SRHPIKAKSA PFSSHGRNLR 480 TTIKEQ* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 343 | 353 | KRKSKIDDRRK |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ccl.3793 | 0.0 | fruit |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006428745.1 | 0.0 | uncharacterized protein LOC18039657 isoform X2 | ||||
Refseq | XP_006428746.1 | 0.0 | uncharacterized protein LOC18039657 isoform X2 | ||||
Refseq | XP_006481484.1 | 0.0 | uncharacterized protein LOC102617973 isoform X2 | ||||
Refseq | XP_006481485.1 | 0.0 | uncharacterized protein LOC102617973 isoform X2 | ||||
TrEMBL | A0A067E9Z0 | 0.0 | A0A067E9Z0_CITSI; Uncharacterized protein | ||||
TrEMBL | V4SXR4 | 0.0 | V4SXR4_9ROSI; Uncharacterized protein | ||||
STRING | XP_006481484.1 | 0.0 | (Citrus sinensis) | ||||
STRING | XP_006428745.1 | 0.0 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM9200 | 19 | 27 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G72650.1 | 2e-23 | TRF-like 6 |
Link Out ? help Back to Top | |
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Phytozome | Ciclev10011603m |
Entrez Gene | 18039657 |