PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ciclev10011588m | ||||||||
Common Name | CICLE_v10011588mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | AP2 | ||||||||
Protein Properties | Length: 490aa MW: 54382.7 Da PI: 6.9812 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 54.6 | 2.8e-17 | 153 | 202 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++grW+++I+d + k+++lg f+ta Aa+a+++a+ k++g Ciclev10011588m 153 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTALAAARAYDRAAIKFRG 202 78*******************......55************************997 PP | |||||||
2 | AP2 | 41.3 | 3.8e-13 | 246 | 296 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV+ +k grW+A+ + rk+++lg + ++eeAa+a+++a +k g Ciclev10011588m 246 SKYRGVTLHK-CGRWEARMGQY--L-GRKYVYLGLYNSEEEAARAYDRAVLKCIG 296 89********.7******5552..2.26*********************998665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 2.29E-15 | 153 | 211 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 1.97E-11 | 153 | 209 | No hit | No description |
Pfam | PF00847 | 5.9E-9 | 153 | 202 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.7E-16 | 154 | 210 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.0E-30 | 154 | 216 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 17.411 | 154 | 210 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.53E-17 | 246 | 305 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 1.36E-23 | 246 | 304 | No hit | No description |
Pfam | PF00847 | 1.8E-9 | 246 | 295 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.4E-15 | 247 | 304 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.1E-31 | 247 | 310 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 15.554 | 247 | 304 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 490 aa Download sequence Send to blast |
MLDLNLSVYS GEYSNSMNRE SSGSFHSSVV TSVGDCCSPA SSSGGYIFSI LKDSNNNSGS 60 NQNDHHHHQH HYQNDNVLTQ GGGGGGGGGS SGIPFIPLII NTEVEEEEEG NNNNDDERDR 120 VASLSQQRDV QIQQHSHSRQ MKKTRRGPRS KSSQYRGVTF YRRTGRWESH IWDCGKQVYL 180 GGFDTALAAA RAYDRAAIKF RGVDADINFH VDDYQDDIRI MSNFTKDEFV YSLRRQNTAA 240 ASRGTSKYRG VTLHKCGRWE ARMGQYLGRK YVYLGLYNSE EEAARAYDRA VLKCIGREAV 300 TNFDPNSYDE NSIYGTNPAE GDNEVDLNLG IAPPKSNDGR KDENNWSKFL FQNGWNNMPN 360 DFGARKTQLE NSVAATARVQ PAPCNPAMPI EPSPPGWSGG FSNHLLNQER ALEKGNINSF 420 PSWTWQFEAP LVGSAAVPRF STAASSGFPS MITAPSVVSN HLHYPNTMVH DRYTQSIINP 480 NMPHFCCRS* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ccl.5635 | 0.0 | fruit |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor (By similarity). Involved in spikelet transition. Together with SNB, controls synergistically inflorescence architecture and floral meristem establishment via the regulation of spatio-temporal expression of B- and E-function floral organ identity genes in the lodicules and of spikelet meristem genes. Prevents lemma and palea elongation as well as grain growth (By similarity). {ECO:0000250|UniProtKB:P47927, ECO:0000250|UniProtKB:Q84TB5}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006480582.1 | 0.0 | ethylene-responsive transcription factor RAP2-7-like isoform X2 | ||||
Swissprot | B8AMA9 | 2e-87 | AP22_ORYSI; APETALA2-like protein 2 | ||||
TrEMBL | V4URJ5 | 0.0 | V4URJ5_9ROSI; Uncharacterized protein | ||||
STRING | XP_006428894.1 | 0.0 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM22886 | 3 | 4 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G36920.2 | 1e-81 | AP2 family protein |
Link Out ? help Back to Top | |
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Phytozome | Ciclev10011588m |
Entrez Gene | 18039165 |