PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10011561m
Common NameCICLE_v10011561mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family C2H2
Protein Properties Length: 495aa    MW: 55109.1 Da    PI: 7.0681
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10011561mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.97.5e-054465223
                     EETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2  2 kCpdCgksFsrksnLkrHirtH 23
                     +C+ Cgk F +   L  H+r H
  Ciclev10011561m 44 QCKVCGKDFESLKALYGHMRHH 65
                     7*******************99 PP
2zf-C2H213.80.000177495223
                     EETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2  2 kCpdCgksFsrksnLkrHirtH 23
                     +C+ Cgk   +  +L +H+r+H
  Ciclev10011561m 74 QCKECGKALLSAKSLSNHMRVH 95
                     8*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003550.0794365IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.5334370IPR007087Zinc finger, C2H2
SuperFamilySSF576679.74E-104495No hitNo description
PfamPF139122.7E-74467IPR007087Zinc finger, C2H2
PROSITE patternPS0002804565IPR007087Zinc finger, C2H2
PROSITE profilePS5015711.36573100IPR007087Zinc finger, C2H2
SMARTSM003550.00727395IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.3E-57496IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS0002807595IPR007087Zinc finger, C2H2
PROSITE profilePS5015711.697346373IPR007087Zinc finger, C2H2
SMARTSM003550.073346368IPR015880Zinc finger, C2H2-like
SuperFamilySSF576672.92E-7347368No hitNo description
PROSITE patternPS000280348368IPR007087Zinc finger, C2H2
SuperFamilySSF576672.92E-7403430No hitNo description
PROSITE profilePS501578.974408430IPR007087Zinc finger, C2H2
SMARTSM003551.4408430IPR015880Zinc finger, C2H2-like
PfamPF139123.5E-9408430IPR007087Zinc finger, C2H2
PROSITE patternPS000280410430IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 495 aa     Download sequence    Send to blast
MDSAKGDDGH ISYDLRENPK KSWKFSSFNH AASASASAST QESQCKVCGK DFESLKALYG  60
HMRHHSRRER ERIQCKECGK ALLSAKSLSN HMRVHSQKLR ACNESGAVKS LVLKKKRSKR  120
KRYNFIGSSS ISTLNESLSS VTEIDQEVVQ TAISLMMLSR GVQDWGKFCS SSEFSCNDSV  180
TIEVKSFGKK KRLLTNRAGC FVSNGNGCLL KKPRLEKLDS IVLYEKEEDE CHEVGSGAES  240
DEGKKVKLEL FIEKFYEEGE FEMPKLDVKP GSVASDDDIG KESSEDLMEE DGLDAEAGKR  300
IITSTSSKKV GFNACYAEYG GDSSSKAMCN ASDYDVFDDP QKESEIRCQA CNKIFCSRRA  360
LGGHQRMHSA KRSSLPVKTT MFTETEPHSK LVKLECIEDL MQRGNKEHTC RICLKVFATG  420
QALGGHKRAH LVKNLDNILQ DITVEQDYSD LSNDLDLNIS NTLEEEVHGD AGSELWVVEG  480
KQHKHERLLS MMAS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1112119LKKKRSKR
2115121KRSKRKR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006431269.10.0zinc finger protein 90
TrEMBLV4UXI50.0V4UXI5_9ROSI; Uncharacterized protein
STRINGXP_006431269.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16241913
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60580.17e-15C2H2-like zinc finger protein