PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ciclev10011194m | ||||||||
Common Name | CICLE_v10011194mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | ARF | ||||||||
Protein Properties | Length: 704aa MW: 77617.9 Da PI: 6.9888 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 74.3 | 1.4e-23 | 122 | 223 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 f k+lt+sd+++ g +++p+ +ae++ ++ + t+ +d +g++W++++iyr++++r++lt+GW+ Fv+ ++L +gD++vF + Ciclev10011194m 122 FAKTLTQSDANNGGGFSVPRYCAETIfprldysADPPVQ--TILAKDVHGETWKFRHIYRGTPRRHLLTTGWSTFVNHKKLVAGDSIVFL--RA 211 89****************************996555555..89***********************************************..44 PP SEE..EEEEE-S CS B3 88 sefelvvkvfrk 99 +++ l+v+++r+ Ciclev10011194m 212 ENGDLCVGIRRA 223 88999****997 PP | |||||||
2 | Auxin_resp | 112.1 | 5.5e-37 | 292 | 375 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 aa+ a+++++FevvY+Prast+eF+vk++ v++al+++++ GmRfkmafetedss++++ +Gt+++v+ +dp+ Wp+S+Wr+L+ Ciclev10011194m 292 AATLAANRQPFEVVYHPRASTPEFCVKASMVKAALQIRWCSGMRFKMAFETEDSSRISWfMGTISSVQVSDPLYWPDSPWRLLQ 375 68899*****************************************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 2.35E-29 | 114 | 225 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 2.0E-37 | 114 | 225 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 3.28E-21 | 121 | 222 | No hit | No description |
Pfam | PF02362 | 8.9E-22 | 122 | 223 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.7E-21 | 122 | 224 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 13.112 | 122 | 224 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 5.2E-32 | 292 | 375 | IPR010525 | Auxin response factor |
PROSITE profile | PS51745 | 21.636 | 617 | 697 | IPR000270 | PB1 domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009734 | Biological Process | auxin-activated signaling pathway | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 704 aa Download sequence Send to blast |
MITFMDSKEK LKEVEKCLDS QLWHACAGGM VQMPPVNSRV FYFPQGHAEH ACGPVDFRSC 60 RRIPPYILCR VSAIKFMADP ETDEVYAKIK LVPVSNNDPD FDNDDGIAGI HSNETQDKPA 120 SFAKTLTQSD ANNGGGFSVP RYCAETIFPR LDYSADPPVQ TILAKDVHGE TWKFRHIYRG 180 TPRRHLLTTG WSTFVNHKKL VAGDSIVFLR AENGDLCVGI RRAKRGIGGG PEVTSGWNGN 240 CVTPYGGFSA FLREDDNKLM RNGIGNVNGP SSNNGNNLMA KGKVRPESVI EAATLAANRQ 300 PFEVVYHPRA STPEFCVKAS MVKAALQIRW CSGMRFKMAF ETEDSSRISW FMGTISSVQV 360 SDPLYWPDSP WRLLQVTWDE PDLLQNVKRV SPWLVELVSN MPTIHLSPFS PPRKKSRLPQ 420 PPDFPLDGQL PMPSFSGSLL GPNSPFGCLP DNTPAGMQGA RHAHYGLSLS DLHLNKLQSG 480 LSPAGFPPFD RAAKPTRASN SPILQKPSMS ENISCLLTMS HSTQPSKKAD DLKTPQLVLF 540 GKPILTEQQM SHSCSGDTVS PVRTGNSSSE GNLDKLTNFS DGSGSALQQQ GLPDRSFCEV 600 FQWYKDNRQE TEPSLETGHC KVFMESEDVG RTLDLSLLGS YDELYKKLAE MFGIENAETL 660 SHLLYRDVTG AVKHIGDEPF SDFMKTARRL TILMDSGSDN VGV* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldu_A | 5e-81 | 18 | 396 | 51 | 388 | Auxin response factor 5 |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots, culms, leaves and young panicles. {ECO:0000269|PubMed:17408882}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006428777.1 | 0.0 | auxin response factor 18 | ||||
Swissprot | Q653H7 | 0.0 | ARFR_ORYSJ; Auxin response factor 18 | ||||
TrEMBL | V4SMW1 | 0.0 | V4SMW1_9ROSI; Auxin response factor | ||||
STRING | XP_006428777.1 | 0.0 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM580 | 27 | 130 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G30080.1 | 0.0 | auxin response factor 16 |
Link Out ? help Back to Top | |
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Phytozome | Ciclev10011194m |
Entrez Gene | 18039094 |
Publications ? help Back to Top | |||
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