PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ciclev10011140m | ||||||||
Common Name | CICLE_v10011141mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | GRAS | ||||||||
Protein Properties | Length: 748aa MW: 84939.6 Da PI: 6.4031 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 395.9 | 4.3e-121 | 374 | 745 | 1 | 374 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfs 94 l++lL++cA+av+++d + a+++L+++++++sp gd +qRla++f+ +L+arla+++s++yk + ++ts ++ l+a++l+ ++P+ k+s Ciclev10011140m 374 LRSLLIHCAQAVAADDRRSAHEFLKQIRQHSSPFGDGNQRLAKCFADGLEARLAGTGSQIYKGFVNKRTS---AADILKAYQLYLAACPFRKLS 464 689*************************************************************999998...9******************** PP GRAS 95 hltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrl 186 ++taN++I+ ++++ r+HiiDf+i +G+QWp+++q ++ Rp+gpp+lRiTg++ p++g +e++eetg+rLa++A+ ++vpfe+n+ +akr+ Ciclev10011140m 465 NFTANKTIMSLAQNSMRLHIIDFGILYGFQWPTFIQRISMRPGGPPKLRITGIEFPQPGfrPAERVEETGRRLADYAKDFNVPFEYNA-IAKRW 557 **********************************************************9*****************************.7**** PP GRAS 187 edleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklprese 280 ++++leeL+++++E+l+Vn+ ++ ++llde+ +++s r+ +L+++++++P+++++ + +n++ F++rf eal ++sa+fd+le+ +pre++ Ciclev10011140m 558 DTIQLEELKIDRDEVLVVNCLYRAKNLLDETIAVDSSRNIFLNFIRKINPHMFIHGITNGAYNAPFFVTRFREALFHFSAMFDMLETIVPREDR 651 ********************************************************************************************** PP GRAS 281 erikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 er+++E+ ++gre+ nvvaceg er+er et+++W+ r +aGF ++pl+ +++k+a +r + + + ++e++ +l++gWk+r ++++SaW+ Ciclev10011140m 652 ERMVIEKDIFGREALNVVACEGWERVERPETYKQWQVRNLRAGFVQLPLDRDIVKKATDRVRSGYHKDFVIDEDNRWLLQGWKGRIIYALSAWK 745 ***************************************************************99888*************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 68.626 | 348 | 725 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 1.5E-118 | 374 | 745 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
Sequence ? help Back to Top |
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Protein Sequence Length: 748 aa Download sequence Send to blast |
MDPRLRGFPG SGNGIQLSNQ PVSVFPNQNL VAGRFENIFL DQRFRDCRYR QPDPTPINVV 60 SSSTVNHEED SPEDCDFSDA VLRYINQMLM EEDIEEKNCM LQESLDLQAA EKSFYDVLGK 120 KYPPSPDHSL TYFHQNGESP DGDTSRNLHG YIYGGSDVSS YLIDNNFIQN SGEYFNSQLQ 180 SLPLSTMPQS SYSSSNSVIT SVDGLVDSPS SSLQLPDWNN ESQSIWQFRK GVEEANKFLP 240 SENELFVNLE ANRLSSWVPK GETNEVAVKE EKEEVEDVSS NGSRGRKNPY REDVDLEEER 300 SSKQAAIYSE SPLRTEMFDM VLLCSGGQSP TVALREALKN ASSKTVQQKG QSKGSNGAKG 360 RGKKQSGKKE VVDLRSLLIH CAQAVAADDR RSAHEFLKQI RQHSSPFGDG NQRLAKCFAD 420 GLEARLAGTG SQIYKGFVNK RTSAADILKA YQLYLAACPF RKLSNFTANK TIMSLAQNSM 480 RLHIIDFGIL YGFQWPTFIQ RISMRPGGPP KLRITGIEFP QPGFRPAERV EETGRRLADY 540 AKDFNVPFEY NAIAKRWDTI QLEELKIDRD EVLVVNCLYR AKNLLDETIA VDSSRNIFLN 600 FIRKINPHMF IHGITNGAYN APFFVTRFRE ALFHFSAMFD MLETIVPRED RERMVIEKDI 660 FGREALNVVA CEGWERVERP ETYKQWQVRN LRAGFVQLPL DRDIVKKATD RVRSGYHKDF 720 VIDEDNRWLL QGWKGRIIYA LSAWKPV* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_A | 3e-51 | 357 | 746 | 1 | 379 | Protein SCARECROW |
5b3h_D | 3e-51 | 357 | 746 | 1 | 379 | Protein SCARECROW |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ccl.12240 | 0.0 | fruit |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in cotyledons, leaves and flowers, and in the elongation zone in root. {ECO:0000269|PubMed:18500650}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006429105.1 | 0.0 | scarecrow-like protein 9 | ||||
Refseq | XP_006480839.1 | 0.0 | scarecrow-like protein 9 | ||||
Swissprot | O80933 | 0.0 | SCL9_ARATH; Scarecrow-like protein 9 | ||||
TrEMBL | A0A2H5P6D3 | 0.0 | A0A2H5P6D3_CITUN; Uncharacterized protein | ||||
TrEMBL | V4STN6 | 0.0 | V4STN6_9ROSI; Uncharacterized protein | ||||
STRING | XP_006480839.1 | 0.0 | (Citrus sinensis) | ||||
STRING | XP_006429104.1 | 0.0 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM358 | 27 | 189 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G37650.1 | 0.0 | GRAS family protein |
Link Out ? help Back to Top | |
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Phytozome | Ciclev10011140m |
Entrez Gene | 18038777 |