PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ciclev10011106m | ||||||||
Common Name | CICLE_v10011099mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | MYB_related | ||||||||
Protein Properties | Length: 788aa MW: 87194.6 Da PI: 6.3912 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 26 | 2.2e-08 | 53 | 95 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT eE+e + a +q G++ +++I +++ + q++++++ + Ciclev10011106m 53 AWTREEEESFFTALRQVGKN-FEKITHRVR-SKNKDQVRHYYYRL 95 6*****************99.*********.***********976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 2.09E-10 | 46 | 100 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 2.4E-5 | 47 | 98 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51293 | 13.021 | 49 | 100 | IPR017884 | SANT domain |
SMART | SM00717 | 9.8E-7 | 50 | 98 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.4E-6 | 53 | 95 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 6.70E-7 | 53 | 96 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 788 aa Download sequence Send to blast |
MQMESQLSMN SEVHLHPRNT PVQDEDPRVV ASSTLDNVIL QQSAKRPTRQ WAAWTREEEE 60 SFFTALRQVG KNFEKITHRV RSKNKDQVRH YYYRLVRRMN KLLGPGLCLD AKNSKDTNAA 120 MLRWWSLLEK YSCKASKLHL KPRRFKIFVE ALEHQLLKDR KRSVRKRPSQ RDSYSPTAPT 180 PIPNQSRTSG QDTCTVKLVL VDSQNIQKLG PAKGSLKRNV NIGINRSNNK ADSATLKPRQ 240 RRKPDSISSA AYKKWEKAAI AGVSLVADAA EHLERTSTDK EVERQQEHTA LETADKVLPP 300 LPTISPTLFA EGNVQTPVKL KLQLYPIDDG TRKALEMDNH NPHLELTLST RKKISSVLEH 360 LNRKWGNASV ASGELMLFPY GAQRENLVGY QRWTQDSVFS AADVYAMIGS PPMFRLRYGW 420 FSDTELGYVA PHAPSASGCV PSFHNINVEN KKEQIVDSVP GRVPSTSDQS ENFVDPYKKL 480 TSVKENDTFA TSSSSMPKET SSYISTSKCD IADTSDPAAN VSWPRKETGN EIITGQAEDM 540 GDERLSSGTA LSAGEWADSL TNISVGDLLA EVPHDLDAAP VAESSQCLQQ IPFSCDSFDA 600 AIAAHISRHQ NKMGALSTLA SHASSIWDAE ETCDAFSFQK NPVLCNGVSR LPDIAPPAAD 660 CEQIARTNSE LLDAEGPTDY PAHEDPMDDC LRNPHTLDNS VNDFNGLTDI YWPDSLGPLD 720 LDIPSSKYRG EDIILSDSLG GLNRLIASSL DAFQNCSFFG LDKKEPTPTV EAGETASFSD 780 FKIGSQG* |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in flowers, roots and leaves. {ECO:0000269|PubMed:15047893}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006428404.1 | 0.0 | TSL-kinase interacting protein 1 isoform X4 | ||||
Refseq | XP_015380958.1 | 0.0 | TSL-kinase interacting protein 1 isoform X4 | ||||
Swissprot | Q8LJT8 | 0.0 | TKI1_ARATH; TSL-kinase interacting protein 1 | ||||
TrEMBL | V4SWV1 | 0.0 | V4SWV1_9ROSI; Uncharacterized protein | ||||
STRING | XP_006428399.1 | 0.0 | (Citrus clementina) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G36960.2 | 0.0 | TSL-kinase interacting protein 1 |
Link Out ? help Back to Top | |
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Phytozome | Ciclev10011106m |
Entrez Gene | 18038154 |