PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10011099m
Common NameCICLE_v10011099mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family MYB_related
Protein Properties Length: 796aa    MW: 87975.5 Da    PI: 6.3076
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10011099mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding262.2e-085395347
                     SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     +WT eE+e +  a +q G++ +++I +++   +   q++++++ +
  Ciclev10011099m 53 AWTREEEESFFTALRQVGKN-FEKITHRVR-SKNKDQVRHYYYRL 95
                     6*****************99.*********.***********976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.17E-1046100IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.4E-54798IPR009057Homeodomain-like
PROSITE profilePS5129313.02149100IPR017884SANT domain
SMARTSM007179.8E-75098IPR001005SANT/Myb domain
PfamPF002493.5E-65395IPR001005SANT/Myb domain
CDDcd001676.78E-75396No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 796 aa     Download sequence    Send to blast
MQMESQLSMN SEVHLHPRNT PVQDEDPRVV ASSTLDNVIL QQSAKRPTRQ WAAWTREEEE  60
SFFTALRQVG KNFEKITHRV RSKNKDQVRH YYYRLVRRMN KLLGPGLCLD AKNSKDTNAA  120
MLRWWSLLEK YSCKASKLHL KPRRFKIFVE ALEHQLLKDR KRSVRKRPSQ RDSYSPTAPT  180
PIPNQSRTSG QDTCTVKLVL VDSQNIQKLG PAKGSLKRNV NIGINRSNNK ADSATLKPRQ  240
RRKPDSISSA AYKKWEKAAI AGVSLVADAA EHLERTSTDK EVERQQEHTA LETADKVLPP  300
LPTISPTLFA EGNVQTPVKL KLQLYPIDDG TRKALEMDNH NPHLELTLST RKKISSVLEH  360
LNRKWGNASV ASGELMLFPY GAQRENLVGY QRWTQDSVFS AADVYAMIGS PPMFRLRYGW  420
FSDTELGYVA PHAPSASGCV PSFHNINVEN KKEQIVDSVP GRVPSTSDQS ENFVDPYKKL  480
TSVKENDTFA TSSSSMPKET SSYISTSKCD IADTSDPAAN VSWPRKETGN EIITGQAEDM  540
GDERLSSGTA LSAGEWADSL TNISVGDLLA EVPHDLDAAP VAESSQCLQQ IPFSCDSFDA  600
AIAAHISRHQ NKMGALSTLA SHASSIWDAE ETCDAFSFQK NPVLCNGVSR LPDIAPPAAD  660
CEQIARTNSV GSGGFFEELL DAEGPTDYPA HEDPMDDCLR NPHTLDNSVN DFNGLTDIYW  720
PDSLGPLDLD IPSSKYRGED IILSDSLGGL NRLIASSLDA FQNCSFFGLD KKEPTPTVEA  780
GETASFSDFK IGSQG*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in flowers, roots and leaves. {ECO:0000269|PubMed:15047893}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006428404.10.0TSL-kinase interacting protein 1 isoform X4
RefseqXP_015380958.10.0TSL-kinase interacting protein 1 isoform X4
SwissprotQ8LJT80.0TKI1_ARATH; TSL-kinase interacting protein 1
TrEMBLV4UQ810.0V4UQ81_9ROSI; Uncharacterized protein
STRINGXP_006428399.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM96332124
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36960.20.0TSL-kinase interacting protein 1