PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ciclev10010993m

Common Name

CICLE_v10010993mg

Organism

Citrus clementina

Taxonomic ID

85681

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

FAR1

Protein Properties

Length: 971aa MW: 110079 Da PI: 6.5662

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ciclev10010993m	genome	ICGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	75	1.6e-23	209	293	2	89
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 fY +YA+++GFsvrk+k ++ ng i kr Cs++g+r++++++ + ++ +r+etrtgC+a+++ + e +gkw+++ + eHnH+l Ciclev10010993m 209 FYTTYAQRIGFSVRKAKVRRL-SNGAIRKRLCFCSRQGFRAKKQST-KATKYQRKETRTGCDAMVEFTVE-NGKWMISGFTPEHNHDL 293 9**************9998.8888999999******9999.99999*************9.*************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	5.2E-21	209	293	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	1.4E-22	405	499	IPR018289	MULE transposase domain
PROSITE profile	PS50966	9.396	683	721	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	4.7E-7	696	723	IPR006564	Zinc finger, PMZ-type
Pfam	PF04434	5.4E-5	696	721	IPR007527	Zinc finger, SWIM-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 971 aa Download sequence Send to blast
MDEMNDSVSS NPEQFVNDGE KWFNRIAADS NENQGGHDPP PFWNLEAREG TSTSILDREW 60 CWLDEISQPG GHTNNHNSSD CWSAASEAPS LNNNFLPPAA AASDAVTPPL LNVVTDGAEN 120 ADAAVMKRQL QNIEKALEMA HNSLQHLPSF DTHIVSLESD GESLMSSESN GDEIQSQSTV 180 NLRGEIPEFN SQNPELGMVF SSEEEAYMFY TTYAQRIGFS VRKAKVRRLS NGAIRKRLCF 240 CSRQGFRAKK QSTKATKYQR KETRTGCDAM VEFTVENGKW MISGFTPEHN HDLEGKSKPM 300 VGSSTKVSED HSISTTMNKA AMVKEGQPTN SVGFQGINCP GIPRNEKTSC PKLLDGQSLI 360 KSFRCLEMEA PSFSYTVQVN AENCLTDFFW TDGRSRIDYD YFGDVVILDT TFRIEAYNMI 420 YAPFLGLNHH GQYVLFGGAF LLDDSKDSFI WLLRTFLDSM GRRQPRTIFT DGYQAMADAI 480 KMVLPKTQHL LGIWYVLRNA KANLSKCYGE PGFNSLFKKC IFDCESEEEF ESMWEYLLEQ 540 YELRANPWLK TQYMLRRKWA YCFCKSVFSA GIRSTQHCHG ISHIFHSLTS KATTPLQFVQ 600 QYFKVAEQQR REELYEDLRC NGSAPPTILR SNAIEKEAAK IYSCTMFKLF QEELLECLSV 660 AIEEIQGDGM TAKFRLTEEG QKKEKIVEFN CMETHLTCSC KKYESVGILC VHALKVLNAK 720 NIFHIPPQYI LKRWTKSAKD GMVVNGHEGE VVDDSQRHLH LDESKLMHKA LNVITKSLPF 780 EETRMIADDY LNIALKNIED ALRTKNIGQL NTRDVYDAYK DAAAAADANG IISVETQQME 840 SNPSTVNQQE ALNYRIKCQL KRKYDNDGRE TKSKSSDGAI THRHSFKEVT KGGDYQGSKK 900 HPSRSYSVGQ NSRHSACVSA LPPLPSQSTC NQFKDHNKSR LNVQVRLEET EKEIERLKER 960 EKEISWFQPM *

Sequence ? help Back to Top

Protein Sequence Length: 971 aa Download sequence Send to blast

MDEMNDSVSS NPEQFVNDGE KWFNRIAADS NENQGGHDPP PFWNLEAREG TSTSILDREW  60
CWLDEISQPG GHTNNHNSSD CWSAASEAPS LNNNFLPPAA AASDAVTPPL LNVVTDGAEN  120
ADAAVMKRQL QNIEKALEMA HNSLQHLPSF DTHIVSLESD GESLMSSESN GDEIQSQSTV  180
NLRGEIPEFN SQNPELGMVF SSEEEAYMFY TTYAQRIGFS VRKAKVRRLS NGAIRKRLCF  240
CSRQGFRAKK QSTKATKYQR KETRTGCDAM VEFTVENGKW MISGFTPEHN HDLEGKSKPM  300
VGSSTKVSED HSISTTMNKA AMVKEGQPTN SVGFQGINCP GIPRNEKTSC PKLLDGQSLI  360
KSFRCLEMEA PSFSYTVQVN AENCLTDFFW TDGRSRIDYD YFGDVVILDT TFRIEAYNMI  420
YAPFLGLNHH GQYVLFGGAF LLDDSKDSFI WLLRTFLDSM GRRQPRTIFT DGYQAMADAI  480
KMVLPKTQHL LGIWYVLRNA KANLSKCYGE PGFNSLFKKC IFDCESEEEF ESMWEYLLEQ  540
YELRANPWLK TQYMLRRKWA YCFCKSVFSA GIRSTQHCHG ISHIFHSLTS KATTPLQFVQ  600
QYFKVAEQQR REELYEDLRC NGSAPPTILR SNAIEKEAAK IYSCTMFKLF QEELLECLSV  660
AIEEIQGDGM TAKFRLTEEG QKKEKIVEFN CMETHLTCSC KKYESVGILC VHALKVLNAK  720
NIFHIPPQYI LKRWTKSAKD GMVVNGHEGE VVDDSQRHLH LDESKLMHKA LNVITKSLPF  780
EETRMIADDY LNIALKNIED ALRTKNIGQL NTRDVYDAYK DAAAAADANG IISVETQQME  840
SNPSTVNQQE ALNYRIKCQL KRKYDNDGRE TKSKSSDGAI THRHSFKEVT KGGDYQGSKK  900
HPSRSYSVGQ NSRHSACVSA LPPLPSQSTC NQFKDHNKSR LNVQVRLEET EKEIERLKER  960
EKEISWFQPM *

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006430508.1	0.0	protein FAR1-RELATED SEQUENCE 7
Refseq	XP_024038030.1	0.0	protein FAR1-RELATED SEQUENCE 7
Refseq	XP_024038031.1	0.0	protein FAR1-RELATED SEQUENCE 7
TrEMBL	V4S8C7	0.0	V4S8C7_9ROSI; Uncharacterized protein
STRING	XP_006430508.1	0.0	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM19171	6	7

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	5e-99	FAR1-related sequence 5

Link Out ? help Back to Top
Phytozome	Ciclev10010993m
Entrez Gene	18038638