PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10010620m
Common NameCICLE_v10010620mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family MYB
Protein Properties Length: 430aa    MW: 47002.7 Da    PI: 8.5119
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10010620mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.93.6e-163481148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+ Ed +l ++v+++G g+W+++ r  g+ R++k+c++rw ++l
  Ciclev10010620m 34 KGPWTAAEDAILTEYVRKHGEGNWNAVQRNTGLARCGKSCRLRWANHL 81
                     79******************************************9986 PP
2Myb_DNA-binding521.6e-1687130146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      +g +++eE+ l+v++++qlG++ W++ a+ ++ gRt++++k++w++
  Ciclev10010620m  87 KGTFSPEEERLIVELHAQLGNK-WARMAAQLP-GRTDNEIKNYWNT 130
                      799*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.3932981IPR017930Myb domain
SuperFamilySSF466898.39E-3032128IPR009057Homeodomain-like
SMARTSM007171.7E-133383IPR001005SANT/Myb domain
PfamPF002491.7E-143481IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.0E-233588IPR009057Homeodomain-like
CDDcd001672.76E-113681No hitNo description
PROSITE profilePS5129424.95682136IPR017930Myb domain
SMARTSM007175.8E-1686134IPR001005SANT/Myb domain
PfamPF002494.7E-1587130IPR001005SANT/Myb domain
CDDcd001671.43E-1189130No hitNo description
Gene3DG3DSA:1.10.10.606.9E-2589135IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009860Biological Processpollen tube growth
GO:0005634Cellular Componentnucleus
GO:0090406Cellular Componentpollen tube
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 430 aa     Download sequence    Send to blast
MLLGNSNGEQ LESGVGGLNV SDGSGGEGGV QLKKGPWTAA EDAILTEYVR KHGEGNWNAV  60
QRNTGLARCG KSCRLRWANH LRPNLKKGTF SPEEERLIVE LHAQLGNKWA RMAAQLPGRT  120
DNEIKNYWNT RVKRRHRQGL PLYPPEIQPQ HQHQHQHQNH QQSSHSHHSY HSQPSTPTTP  180
TSSFSFPIAA TTPTTPTGGH HQHHSLHHHF PPPCYSRSPT PSSLPPTPPP LSPGLRSPHQ  240
PAFPTLTLFD TNTNTNANNN SNAANSSVMS SNNISNTFNM PRTPPLLQNP PRFKRFHSDT  300
SINTFAANQN DINNNNNINS SSSFQGSNNF SMPFLPFFRS PSSPSLLTSP TSNCNTSAFP  360
SATTKLLSHP SFSFVPEWYN DSGEASNCQS SVVTDDNLGL ELQQLASILH VDSTTAPGSC  420
SYDNLPGIC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-31321355107B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9216011e-135EU921601.1 Citrus unshiu clone GB-CU-120 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006475135.11e-170transcription factor MYB120
TrEMBLV4USX80.0V4USX8_9ROSI; Uncharacterized protein
STRINGXP_006452391.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM51002747
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G55020.15e-71myb domain protein 120