PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ciclev10010617m

Common Name

CICLE_v10010617mg

Organism

Citrus clementina

Taxonomic ID

85681

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

NZZ/SPL

Protein Properties

Length: 409aa MW: 44576.9 Da PI: 8.268

Description

NZZ/SPL family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ciclev10010617m	genome	ICGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NOZZLE	22.7	1.6e-07	31	80	52	98
NOZZLE 52 aqqkqkkptlrgmgvaklerfiieeekkkl...vvatvgdtssvaaisnt 98 +qk kk rg+gva+ler +iee+k+k +++++ ss +++n+ Ciclev10010617m 31 KKQKPKKVPQRGLGVAQLERIRIEEQKRKDaslTASSNQPCSSSISSPNS 80 4688899999*****************98622133334445555555553 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF08744	1.1E-5	31	85	IPR014855	Plant transcription factor NOZZLE

Sequence ? help Back to Top
Protein Sequence Length: 409 aa Download sequence Send to blast
MGQEDQTQKC SNSSSGNCSG GGLGNIVRSA KKQKPKKVPQ RGLGVAQLER IRIEEQKRKD 60 ASLTASSNQP CSSSISSPNS MFMPSSCSSV IQNIEILNSK ANTVPSTNNP AGCSSSSVSI 120 HHGHAANVHK LHNSCDYSLE KESAGVDPGL NFRSNFNNLP FDSVPVWPFP SSMQRPQLFL 180 HPSSSMVFES SSATSSSSII NFQMEPPSNQ SYYSNNYPPM WPEEDKMVGM KRPYPFSIDH 240 PPAFSTLHYK IPPIVHPRVI SRSEDSASCG RGHTLIFEPG FAMSREGSSC SAFMLEPNNS 300 KKSIKENGVL NGGFLTLAPP TSTSLCQGSK FKRPPHFLAF TNSEFPDFEL LPYQGSVVDQ 360 MHRPGQNQRQ PYYSFFPQSM AQTGQATSTM TNCNNGEVGE SVDLNLKL*

Sequence ? help Back to Top

Protein Sequence Length: 409 aa Download sequence Send to blast

MGQEDQTQKC SNSSSGNCSG GGLGNIVRSA KKQKPKKVPQ RGLGVAQLER IRIEEQKRKD  60
ASLTASSNQP CSSSISSPNS MFMPSSCSSV IQNIEILNSK ANTVPSTNNP AGCSSSSVSI  120
HHGHAANVHK LHNSCDYSLE KESAGVDPGL NFRSNFNNLP FDSVPVWPFP SSMQRPQLFL  180
HPSSSMVFES SSATSSSSII NFQMEPPSNQ SYYSNNYPPM WPEEDKMVGM KRPYPFSIDH  240
PPAFSTLHYK IPPIVHPRVI SRSEDSASCG RGHTLIFEPG FAMSREGSSC SAFMLEPNNS  300
KKSIKENGVL NGGFLTLAPP TSTSLCQGSK FKRPPHFLAF TNSEFPDFEL LPYQGSVVDQ  360
MHRPGQNQRQ PYYSFFPQSM AQTGQATSTM TNCNNGEVGE SVDLNLKL*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006451746.1	0.0	uncharacterized protein LOC18054000 isoform X1
Refseq	XP_024956314.1	0.0	uncharacterized protein LOC102617986 isoform X1
Refseq	XP_024956315.1	0.0	uncharacterized protein LOC102617986 isoform X1
TrEMBL	A0A2H5PZI1	0.0	A0A2H5PZI1_CITUN; Uncharacterized protein
TrEMBL	V4UR78	0.0	V4UR78_9ROSI; SPOROCYTELESS-like EAR-containing protein 2
STRING	XP_006485836.1	0.0	(Citrus sinensis)
STRING	XP_006451746.1	0.0	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM15794	2	2

Link Out ? help Back to Top
Phytozome	Ciclev10010617m
Entrez Gene	18054000