PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ciclev10010497m | ||||||||
Common Name | CICLE_v10010497mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | Nin-like | ||||||||
Protein Properties | Length: 189aa MW: 21226 Da PI: 6.3858 | ||||||||
Description | Nin-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | RWP-RK | 71.6 | 1.1e-22 | 141 | 188 | 2 | 49 |
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRki 49 + +++l dl yF+lpi++AA+ +++c+Tv+K+iCR+ G++RWPhRk+ Ciclev10010497m 141 TGKLTLRDLMIYFHLPIEEAARRMKLCPTVVKKICRRDGLHRWPHRKV 188 5689*******************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51519 | 15.585 | 131 | 188 | IPR003035 | RWP-RK domain |
Pfam | PF02042 | 3.1E-19 | 143 | 188 | IPR003035 | RWP-RK domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 189 aa Download sequence Send to blast |
MADPRAIVPY HDPHDNSYTE DIFNFINNPN PTFADLSLFE EPSSIPHSTN NPQSGGIITD 60 AGDPFDDPLF WDIGNNCNAG SFQAGPSGNQ AEMSDRGTPA IENAANMKAF PRWPVPPEPY 120 LCSCCLVLRE IIHTNVQRER TGKLTLRDLM IYFHLPIEEA ARRMKLCPTV VKKICRRDGL 180 HRWPHRKV* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB573149 | 0.0 | AB573149.1 Citrus unshiu genomic DNA, polyembryony locus, cultivar: Miyagawa wase. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006474671.1 | 5e-97 | uncharacterized protein LOC102621663 | ||||
TrEMBL | A0A2H5NBB2 | 1e-140 | A0A2H5NBB2_CITUN; Uncharacterized protein | ||||
STRING | XP_006453027.1 | 1e-139 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4076 | 23 | 42 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G35590.1 | 8e-10 | RWP-RK domain-containing protein |
Link Out ? help Back to Top | |
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Phytozome | Ciclev10010497m |
Entrez Gene | 18055737 |