PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10010237m
Common NameCICLE_v10010237mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family AP2
Protein Properties Length: 372aa    MW: 42056.1 Da    PI: 6.9956
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10010237mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP239.61.3e-123995155
              AP2  1 sgykGVrwdkkrgrWvAeIrd.pseng.krkrfslgkfgtaeeAakaaiaarkkleg 55
                     s y+GV++++++gr++A+++d  ++n  ++k+ + g ++ +e Aa a++ a++k++g
  Ciclev10010237m 39 SIYRGVTRHRWTGRYEAHLWDkNCWNEsQNKKGRQGAYDDEEAAAHAYDLAALKYWG 95
                     57*******************99998898888888********************98 PP
2AP251.13.2e-16138189155
              AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      s+y+GV +++ +grW+A+I   +   g +k+ +lg++ t eeAa a++ a+ +++g
  Ciclev10010237m 138 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYATQEEAATAYDMAAIEYRG 189
                      89****99**********99966...3.6*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.7E-1539105IPR016177DNA-binding domain
PfamPF008471.1E-83995IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.9E-1340104IPR001471AP2/ERF domain
SMARTSM003805.4E-2140109IPR001471AP2/ERF domain
PROSITE profilePS5103218.86140103IPR001471AP2/ERF domain
PRINTSPR003674.3E-64152IPR001471AP2/ERF domain
CDDcd000183.01E-24138199No hitNo description
SuperFamilySSF541711.11E-17138199IPR016177DNA-binding domain
PfamPF008475.9E-12138189IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.2E-17139198IPR001471AP2/ERF domain
SMARTSM003801.2E-24139203IPR001471AP2/ERF domain
PROSITE profilePS5103218.334139197IPR001471AP2/ERF domain
PRINTSPR003674.3E-6179199IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 372 aa     Download sequence    Send to blast
MAKLSQQSQK SNANNNNGVT KVKRTRRSVP RDSPPQRSSI YRGVTRHRWT GRYEAHLWDK  60
NCWNESQNKK GRQGAYDDEE AAAHAYDLAA LKYWGPDTIL NFPLSTYQKE LKDMEGLSRE  120
EYIGSLRRKS SGFSRGVSKY RGVARHHHNG RWEARIGRVF GNKYLYLGTY ATQEEAATAY  180
DMAAIEYRGL NAVTNFDLSR YIKWLKPNHQ INPHLIDTTS PSSSSIINNG NNSDYNHQES  240
NSSFFNNNNQ SGSTVRDQPP TTTLLTDHYH QPVVRPVSAT SALGLLLQSS KFKEMMEMTS  300
SSEADNHHCS SLTPSTESSD PFQCSFPEDI QTYFGGCQDS SNFGEGDDDD DVFFRELNSF  360
VPPMFQCDFD A*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006453545.10.0AP2-like ethylene-responsive transcription factor At1g16060
SwissprotQ94AN41e-100AP2L1_ARATH; AP2-like ethylene-responsive transcription factor At1g16060
TrEMBLV4UR260.0V4UR26_9ROSI; Uncharacterized protein
STRINGXP_006453545.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM55327140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G16060.11e-87ARIA-interacting double AP2 domain protein
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]
  2. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]