PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10010226m
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family FAR1
Protein Properties Length: 649aa    MW: 75326.1 Da    PI: 9.0178
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10010226mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR168.22.1e-2117107291
             FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHelap 91 
                      fY+eYAk vGF vr++++++  ++g  t r++vCsk+g+r ++  + ++++r+ r+ trtgC+a++++++++ +  w+ t +  +HnH+l+p
  Ciclev10010226m  17 FYHEYAKFVGFGVRRNTKRYD-KQGMLTGRQWVCSKQGFRPQKYLRlANRSREARPLTRTGCRAEFRISLNErKTAWVCTFFYGKHNHNLTP 107
                      9***************99998.7778**************9998877899999******************9999**************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.2E-1817107IPR004330FAR1 DNA binding domain
PfamPF105511.1E-32146240IPR018289MULE transposase domain
PROSITE profilePS509669.507423459IPR007527Zinc finger, SWIM-type
SMARTSM005750.0098434461IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 649 aa     Download sequence    Send to blast
MEFVGKEFTT EDEADHFYHE YAKFVGFGVR RNTKRYDKQG MLTGRQWVCS KQGFRPQKYL  60
RLANRSREAR PLTRTGCRAE FRISLNERKT AWVCTFFYGK HNHNLTPIGQ IHRFFYEYTI  120
DQEHRLGDLF WCDGGARADY AVFGDVLAFD ATYRTNAYKK PFVVFLGINH HRKSIVFGFA  180
LLSDEKEHTY VWLLQTFLAA MEGKQPATVI TDGDRAMRNA IIKTFPVSVH RLCCWHLGRN  240
AQANIHNTEF VNDFRRFMFQ PYNEDEFNHK WVLMVQKHRV ETNEWVKKVY EERKLWAEAY  300
LKGNFFGGMR STQRSEGMNA YLNHYVNRKL RLRDFVKQMD RLMDRQRESE GKDDFDSTDG  360
CPILTTHLKK YEQQAADVYT KAVFYMVREE IDKEGLLTAT LIEEDMLSKT YQVKKFGNQH  420
KEHTVILYIE SRKLSCTCMH YNSVGMPCSH SFVVMKAENL PEIPNCMILS RWRKDAKLEV  480
IPSEFVNDVA QYMSVEARVG SIHTACRGLL KFVGKSIDAY NMAIIDIHKL SLRLEGMCSI  540
AEPSGRKGER QRAPLVKDPV VVLTKGAAKK LKVRPTEQRK CKKCREGGHT VPLGTSSDIL  600
LQQNGDSMLG ESLDHMQVDL IGSNFPNSQY STTSDINDYI NIWNYTDF*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015384988.10.0protein FAR1-RELATED SEQUENCE 5-like
TrEMBLV4WFW30.0V4WFW3_9ROSI; Uncharacterized protein (Fragment)
STRINGXP_006452274.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM11826253
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.12e-80FAR1-related sequence 5