PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10009742m
Common NameCICLE_v10009338mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family MIKC_MADS
Protein Properties Length: 163aa    MW: 18461.6 Da    PI: 9.8917
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10009742mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF82.42.9e-26959151
                     S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
           SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                     krien +nrqvtfskRrng++KKA EL +LCda+v+++i sst k +ey+s
  Ciclev10009742m  9 KRIENATNRQVTFSKRRNGLFKKARELTILCDAKVSILICSSTAKAHEYIS 59
                     79***********************************************86 PP
2K-box51.73.8e-1871139169
            K-box   1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskK 69 
                      yqk+  ++l+++++e++ ++l  +++ ++ L++++R+++Ge+L++L+l+eL  Leq++ ++lk iR+ K
  Ciclev10009742m  71 YQKTLRVDLWSSHYEKMLENLGAVEQVNRILKKQIRQRMGESLNDLTLEELTGLEQDILDGLKIIRECK 139
                      78888899**********************************************************977 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006630.614161IPR002100Transcription factor, MADS-box
SMARTSM004322.4E-37160IPR002100Transcription factor, MADS-box
SuperFamilySSF554556.15E-33290IPR002100Transcription factor, MADS-box
CDDcd002653.90E-37280No hitNo description
PRINTSPR004046.2E-26323IPR002100Transcription factor, MADS-box
PfamPF003191.1E-221057IPR002100Transcription factor, MADS-box
PRINTSPR004046.2E-262338IPR002100Transcription factor, MADS-box
PRINTSPR004046.2E-263859IPR002100Transcription factor, MADS-box
PfamPF014861.7E-1082139IPR002487Transcription factor, K-box
PROSITE profilePS512978.97784162IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 163 aa     Download sequence    Send to blast
MGRGKMEMKR IENATNRQVT FSKRRNGLFK KARELTILCD AKVSILICSS TAKAHEYISP  60
STTTKQLLDL YQKTLRVDLW SSHYEKMLEN LGAVEQVNRI LKKQIRQRMG ESLNDLTLEE  120
LTGLEQDILD GLKIIRECKV IKPYTLCASS STTVIVNVSN LL*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed during flower development in stamens and petals. {ECO:0000269|PubMed:17920788}.
UniprotTISSUE SPECIFICITY: Predominantly expressed in petals and stamens, less in carpels and sepals.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}.
UniProtTranscription factor involved in the genetic control of flower development. Necessary for the normal development of petals. Absence of the PMADS1 protein causes transformation of petals into sepals.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB2186140.0AB218614.1 Citrus unshiu CitMADS8 mRNA for MADS-box protein, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006453002.14e-97floral homeotic protein PMADS 1
SwissprotE0CPH42e-64AP3_VITVI; Agamous-like MADS-box protein AP3
SwissprotQ074722e-64MADS1_PETHY; Floral homeotic protein PMADS 1
TrEMBLV4WHR91e-115V4WHR9_9ROSI; Uncharacterized protein
STRINGXP_006453003.15e-96(Citrus clementina)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54340.14e-54MIKC_MADS family protein
Publications ? help Back to Top
  1. Immink RG, et al.
    Analysis of the petunia MADS-box transcription factor family.
    Mol. Genet. Genomics, 2003. 268(5): p. 598-606
    [PMID:12589434]
  2. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  3. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  4. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]
  5. Kush A,Brunelle A,Shevell D,Chua NH
    The cDNA sequence of two MADS box proteins in Petunia.
    Plant Physiol., 1993. 102(3): p. 1051-2
    [PMID:8278527]