PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10009173m
Common NameCICLE_v10009173mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family MYB_related
Protein Properties Length: 273aa    MW: 29711.6 Da    PI: 9.1031
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10009173mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding39.11.8e-12555146
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqk 46
                     +++WT+eE+e l  +v+++G+g Wk I r          R+  ++k++w++
  Ciclev10009173m  5 KQKWTAEEEEALRAGVAKHGTGKWKNIQRDPEfnpflFSRSNIDLKDKWRN 55
                     79*****************************9*9**989**********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.355161IPR017930Myb domain
SuperFamilySSF466891.44E-16258IPR009057Homeodomain-like
SMARTSM007175.2E-9459IPR001005SANT/Myb domain
PfamPF002492.8E-9555IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.1E-14556IPR009057Homeodomain-like
CDDcd116604.03E-21656No hitNo description
Gene3DG3DSA:1.10.10.105.9E-16107182IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM005262.0E-21108173IPR005818Linker histone H1/H5, domain H15
SuperFamilySSF467855.28E-17109190IPR011991Winged helix-turn-helix DNA-binding domain
PROSITE profilePS5150425.737110178IPR005818Linker histone H1/H5, domain H15
PfamPF005384.3E-11112171IPR005818Linker histone H1/H5, domain H15
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006334Biological Processnucleosome assembly
GO:0000786Cellular Componentnucleosome
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 273 aa     Download sequence    Send to blast
MGNPKQKWTA EEEEALRAGV AKHGTGKWKN IQRDPEFNPF LFSRSNIDLK DKWRNMSVSA  60
PREKSRTLKP KAGSDAPAVP LSTPQTSALP AAVPIDASAD PITDESARSS APKYNALIFE  120
AISALKEPNG SDVSAILSYI EQRLEVPPNF RRLLSSRLRR LVAQEKLEKV QNCFKVKEDA  180
SLGTKTPNPK QKDTRPKLLH STNDLSPADT VQEAAAAAAG QVADAENKSF VAAEAVKEAE  240
RVSRMAEDTD SLLQLAKEIL ERCSRGEIVV VA*
Functional Description ? help Back to Top
Source Description
UniProtBinds preferentially double-stranded telomeric repeats. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006451517.10.0single myb histone 4
RefseqXP_006475491.10.0single myb histone 4-like
SwissprotF4IEY42e-73TRB5_ARATH; Telomere repeat-binding factor 5
TrEMBLV4TW200.0V4TW20_9ROSI; Uncharacterized protein
STRINGXP_006475491.10.0(Citrus sinensis)
STRINGXP_006451517.10.0(Citrus clementina)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72740.22e-56MYB_related family protein
Publications ? help Back to Top
  1. Kotliński M, et al.
    Phylogeny-Based Systematization of Arabidopsis Proteins with Histone H1 Globular Domain.
    Plant Physiol., 2017. 174(1): p. 27-34
    [PMID:28298478]