PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10009072m
Common NameCICLE_v10009072mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family Trihelix
Protein Properties Length: 293aa    MW: 33301.3 Da    PI: 5.8608
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10009072mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix36.31.4e-111987270
         trihelix  2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekk 70
                     W+ +e l L++    +e +  ++ +  ++W+ +s+ + +  + r+++qC+ kw++l  +ykk+  +++ 
  Ciclev10009072m 19 WSSKEALILVNEIAAVEADCLKALSSYQKWKIISETCTALDVPRTANQCRRKWDSLLDEYKKMIVRSRT 87
                     **************************************************************8766655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138372.3E-91885No hitNo description
Gene3DG3DSA:1.10.10.606.0E-51876IPR009057Homeodomain-like
PROSITE profilePS500907.1781975IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009506Cellular Componentplasmodesma
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 293 aa     Download sequence    Send to blast
MEGGSSGTRR TRSQVGPDWS SKEALILVNE IAAVEADCLK ALSSYQKWKI ISETCTALDV  60
PRTANQCRRK WDSLLDEYKK MIVRSRTFPN SQTQTHTDCF PPNFDSELFK AIHDFVMSKD  120
NRSDDTDPDS DTDPEAYFSE AISQAQLGSK RQRRQSMRVK HCAEQKPLKS CLHENHQKSG  180
CTEEKLCNSH VEEEPRIRLV EKKCQNSHIK EKKSLKSCVE ENEQMMVAKL QENAELIHAI  240
VAESADYSDA DLNNVQDLES EFVRRQGDKL IACLGEIVNT LNQFTDHVQE CK*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006450086.10.0uncharacterized protein LOC18056012
RefseqXP_006450087.10.0uncharacterized protein LOC18056012
RefseqXP_024034408.10.0uncharacterized protein LOC18056012
TrEMBLV4UBC70.0V4UBC7_9ROSI; Uncharacterized protein
STRINGXP_006450086.10.0(Citrus clementina)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31270.12e-57sequence-specific DNA binding transcription factors