PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10009050m
Common NameCICLE_v10009050mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family MYB
Protein Properties Length: 298aa    MW: 33303.7 Da    PI: 8.8371
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10009050mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding61.51.8e-191461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd++lvd+++++G g+W+t ++  g++R++k+c++rw +yl
  Ciclev10009050m 14 KGPWTAEEDQKLVDYIQKHGHGRWRTLPKNAGLKRCGKSCRLRWTNYL 61
                     79********************************************97 PP
2Myb_DNA-binding55.51.3e-1767111147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg+++ eE+e +++++k lG++ W++Ia++++ gRt++++k++w+++
  Ciclev10009050m  67 RGKFSLEEEEAIIQLHKVLGNK-WSAIASRLP-GRTDNEIKNYWNTH 111
                      89********************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.0E-25664IPR009057Homeodomain-like
PROSITE profilePS5129419.417961IPR017930Myb domain
SuperFamilySSF466894.12E-3211108IPR009057Homeodomain-like
SMARTSM007176.0E-161363IPR001005SANT/Myb domain
PfamPF002494.1E-171461IPR001005SANT/Myb domain
CDDcd001671.14E-121661No hitNo description
PROSITE profilePS5129426.89262116IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.4E-2765116IPR009057Homeodomain-like
SMARTSM007175.4E-1766114IPR001005SANT/Myb domain
PfamPF002495.7E-1667111IPR001005SANT/Myb domain
CDDcd001671.71E-1269112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 298 aa     Download sequence    Send to blast
MGRPPSSDKN GLKKGPWTAE EDQKLVDYIQ KHGHGRWRTL PKNAGLKRCG KSCRLRWTNY  60
LRPDIKRGKF SLEEEEAIIQ LHKVLGNKWS AIASRLPGRT DNEIKNYWNT HIKKKLLRMG  120
IDPVTHSPRL DLLELSSILS SSLCNSTQLN ASNLLSLGLL NPDLLNLATT LLSCQNTTPQ  180
FTPQTFQQQN HQALQYPINQ ACLKTPVDSN PPYVNETQTP QAILEQLSSN PTNFSWQYIL  240
TNFIANMRFG SVLATPSSSS TPLNSSSTNY VNGCTEDERD SYCSNLLFDS LDAIGLV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-31121165108B-MYB
1h8a_C5e-311211625128MYB TRANSFORMING PROTEIN
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in rosette leaves, cauline leaves and flowers. {ECO:0000269|PubMed:8980549}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may function in osmotic stress and wounding signaling pathways (Probable). Contributes to basal resistance against the herbivore Pieris rapae (white cabbage butterfly) feeding (PubMed:19517001). {ECO:0000269|PubMed:19517001, ECO:0000305|PubMed:12857823}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by light (PubMed:8980549). Induced by wounding, salt stress and abscisic acid (PubMed:12857823). Induced by the lepidopteran herbivore Pieris rapae (white cabbage butterfly) feeding (PubMed:19517001). {ECO:0000269|PubMed:12857823, ECO:0000269|PubMed:19517001, ECO:0000269|PubMed:8980549}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006464660.11e-178transcription factor MYB41
SwissprotQ9LDR82e-97MY102_ARATH; Transcription factor MYB102
TrEMBLV4URZ50.0V4URZ5_9ROSI; Uncharacterized protein
STRINGXP_006452016.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21440.11e-83MYB-like 102
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Huang KC,Lin WC,Cheng WH
    Salt hypersensitive mutant 9, a nucleolar APUM23 protein, is essential for salt sensitivity in association with the ABA signaling pathway in Arabidopsis.
    BMC Plant Biol., 2018. 18(1): p. 40
    [PMID:29490615]
  4. Zhu L,Guo J,Ma Z,Wang J,Zhou C
    Arabidopsis Transcription Factor MYB102 Increases Plant Susceptibility to Aphids by Substantial Activation of Ethylene Biosynthesis.
    Biomolecules, 2019.
    [PMID:29880735]