PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10009011m
Common NameCICLE_v10009011mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family MYB_related
Protein Properties Length: 306aa    MW: 32901.2 Da    PI: 10.0223
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10009011mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding40.94.9e-13122166347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE+  ++ + ++lG g+W+ I++ + ++Rt+ q+ s+ qky
  Ciclev10009011m 122 PWTEEEHRVFLMGLEKLGRGDWRGISKNFVTTRTPTQVASHAQKY 166
                      8*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501588.73318IPR001878Zinc finger, CCHC-type
PROSITE profilePS5129418.069115171IPR017930Myb domain
SuperFamilySSF466892.32E-18117173IPR009057Homeodomain-like
TIGRFAMsTIGR015571.5E-18118170IPR006447Myb domain, plants
SMARTSM007171.6E-10119169IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.8E-11119166IPR009057Homeodomain-like
PfamPF002497.2E-11122166IPR001005SANT/Myb domain
CDDcd001673.18E-9122167No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    Send to blast
MGRKCSHCGN TGHNSRTCSS YDNNLKGGSC STSTLAGGLR LFGVQLAISS NSSSSSSSQL  60
LPLKKSLSTD SFPAIPSPSS SASSSSSTGV TINIDQHSNK LSNGYISDSL IAPTQDRKKG  120
VPWTEEEHRV FLMGLEKLGR GDWRGISKNF VTTRTPTQVA SHAQKYFLRQ KNLYKRKRRP  180
SLFDQMGRDK FSNKVLHTCC SKPGEPSNFC GLLLKSTKAS PSNGICDSSS ALAYNSLPKC  240
FNESFNFQPA ASFNLKMLTA ASASPPNLEL TLAAPTPLDQ RKVCTRDLMI EAISVISPSQ  300
LSELS*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006450815.10.0transcription factor MYBS3
TrEMBLV4UIJ00.0V4UIJ0_9ROSI; Uncharacterized protein
STRINGXP_006450815.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM54962747
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56840.14e-44MYB_related family protein