PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10008804m
Common NameCICLE_v10008684mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family bHLH
Protein Properties Length: 349aa    MW: 37813.1 Da    PI: 8.1477
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10008804mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH11.80.000452212591255
                      HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH  12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      R +++ +++  L +l+ +      +K + a++L +A+ YI+ Lq
  Ciclev10008804m 221 RKEKLGDRITALHQLVSPF-----GKTDTASVLLEAIGYIRFLQ 259
                      6677889999999999998.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.725209258IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.84E-10219269IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.60E-6219263No hitNo description
Gene3DG3DSA:4.10.280.102.9E-7223265IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 349 aa     Download sequence    Send to blast
MNRGILQSSP VQQMMAGNPN WWNINSMRPP TPQASPFLPP PANNLFPQYP SCYDNQEQLP  60
ESWSQLLLGR MVDEEDKSGM VGHFQTKKVE NWEEQILHHS SSSANSVVNV KQEINPAANS  120
YFYGHANDDH FQAAAASAAT KTTSWSQVMP PAAAASSPNN KSCVTSFSSN MLDFTSTKAD  180
ARHPPPDRSS ECNSTASGGV AKKARVQSSS SSSTQSTFKV RKEKLGDRIT ALHQLVSPFG  240
KTDTASVLLE AIGYIRFLQS QIEALSLPYL GSSGSAAMRQ QQHSQHPLLN DNCMKRKGTS  300
DHQESQEEVK KSLRSRGLCL VPVSCTLQVG SDNGADYWAP ALGGGGLR*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ccl.34920.0fruit
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006451208.10.0transcription factor bHLH68 isoform X2
RefseqXP_006475663.10.0transcription factor bHLH68 isoform X2
SwissprotQ8S3D11e-95BH068_ARATH; Transcription factor bHLH68
TrEMBLV4TV650.0V4TV65_9ROSI; Uncharacterized protein
STRINGXP_006475662.10.0(Citrus sinensis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29100.12e-82bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Le Hir R, et al.
    AtbHLH68 transcription factor contributes to the regulation of ABA homeostasis and drought stress tolerance in Arabidopsis thaliana.
    Physiol Plant, 2017. 160(3): p. 312-327
    [PMID:28369972]
  3. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]