PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10008647m
Common NameCICLE_v10008517mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family C3H
Protein Properties Length: 381aa    MW: 41098.6 Da    PI: 8.3161
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10008647mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH37.15.3e-12629226
                     -S---SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHg 26
                     k  lCr+f+r G C+yG+rCkF H+
  Ciclev10008647m  6 KKDLCRNFQR-GSCQYGERCKFLHV 29
                     889*******.*************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902294.06E-6331IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.389431IPR000571Zinc finger, CCCH-type
PfamPF006421.2E-9529IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.9E-9528IPR000571Zinc finger, CCCH-type
SMARTSM003565.2E-6530IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005635Cellular Componentnuclear envelope
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 381 aa     Download sequence    Send to blast
MMPYKKKDLC RNFQRGSCQY GERCKFLHVT QQQPNPFGFG VQNNPQSKGT NNYNFGNKQN  60
QSKPFENKWT RFSPITGGGV PASRQPDNQP QSANHKCSDP DSCKRIIAED FELERPLWKL  120
TCYGHWKNAP CDIVGDISYE ELRAAAYDDA KCGSSLHSIV ERERNLLNSN LMKFDNLLRN  180
PYTGPCNSAL SGQSPFAAAS PNAFSPTPQD STAPSLSSFN QVGSLVNMGF GTRPSTPSNN  240
AFGQPSSFPN SSQTSSAFGT NNFPSASGGL FDNQFPPAQA IRSPFTSGMT SLSNNGVVGF  300
GSNKISTPIF ATHNPLFGNQ SSIPSGGPVS TSTAAEQATT NIQMVKNLQN GAVLGDTSVW  360
LKVKWIPGEI PEEAPPDAFV *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006453733.10.0zinc finger CCCH domain-containing protein 16 isoform X2
TrEMBLV4U2970.0V4U297_9ROSI; Uncharacterized protein
STRINGXP_006473927.10.0(Citrus sinensis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75340.14e-82C3H family protein