PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ciclev10008517m

Common Name

CICLE_v10008517mg

Organism

Citrus clementina

Taxonomic ID

85681

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

C3H

Protein Properties

Length: 400aa MW: 43174.8 Da PI: 7.9357

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ciclev10008517m	genome	ICGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	18.1	4.8e-06	37	48	15	26
-TTTTT-SS-SS CS zf-CCCH 15 CkyGdrCkFaHg 26 C+yG+rCkF H+ Ciclev10008517m 37 CQYGERCKFLHV 48 ***********7 PP

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005635	Cellular Component	nuclear envelope
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 400 aa Download sequence Send to blast
MKAKVFSTRY TSVSKIRTQE DDAIQEERSL QKLSTCCQYG ERCKFLHVTQ QQPNPFGFGV 60 QNNPQSKGTN NYNFGNKQNQ SKPFENKWTR FSPITGGGVP ASRQPDNQPQ SANHKCSDPD 120 SCKRIIAEDF ELERPLWKLT CYGHWKNAPC DIVGDISYEE LRAAAYDDAK CGSSLHSIVE 180 RERNLLNSNL MKFDNLLRNP YTGPCNSALS GQSPFAAASP NAFSPTPQDS TAPSLSSFNQ 240 VGSLVNMGFG TRPSTPSNNA FGQPSSFPNS SQTSSAFGTN NFPSASGGLF DNQFPPAQAI 300 RSPFTSGMTS LSNNGVVGFG SNKISTPIFA THNPLFGNQS SIPSGGPVST STAAEQATTN 360 IQMVKNLQNG AVLGDTSVWL KVKWIPGEIP EEAPPDAFV*

Sequence ? help Back to Top

Protein Sequence Length: 400 aa Download sequence Send to blast

MKAKVFSTRY TSVSKIRTQE DDAIQEERSL QKLSTCCQYG ERCKFLHVTQ QQPNPFGFGV  60
QNNPQSKGTN NYNFGNKQNQ SKPFENKWTR FSPITGGGVP ASRQPDNQPQ SANHKCSDPD  120
SCKRIIAEDF ELERPLWKLT CYGHWKNAPC DIVGDISYEE LRAAAYDDAK CGSSLHSIVE  180
RERNLLNSNL MKFDNLLRNP YTGPCNSALS GQSPFAAASP NAFSPTPQDS TAPSLSSFNQ  240
VGSLVNMGFG TRPSTPSNNA FGQPSSFPNS SQTSSAFGTN NFPSASGGLF DNQFPPAQAI  300
RSPFTSGMTS LSNNGVVGFG SNKISTPIFA THNPLFGNQS SIPSGGPVST STAAEQATTN  360
IQMVKNLQNG AVLGDTSVWL KVKWIPGEIP EEAPPDAFV*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024953700.1	0.0	zinc finger CCCH domain-containing protein 16 isoform X1
TrEMBL	V4WJK7	0.0	V4WJK7_9ROSI; Uncharacterized protein
STRING	XP_006453734.1	0.0	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM10724	27	31

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G75340.2	7e-79	C3H family protein

Link Out ? help Back to Top
Phytozome	Ciclev10008517m
Entrez Gene	18053783