PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ciclev10008366m | ||||||||
Common Name | CICLE_v10008366mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | CO-like | ||||||||
Protein Properties | Length: 430aa MW: 47071.1 Da PI: 7.7979 | ||||||||
Description | CO-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 20.5 | 9.8e-07 | 75 | 111 | 4 | 37 |
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg....H 37 + C++++ + fC+ ++ +lC +C l +H + H Ciclev10008366m 75 KPCDTCKAAAAAVFCRVDSAFLCLNCDLRIH-NcmnkH 111 68******99*********************.435556 PP | |||||||
2 | zf-B_box | 25.8 | 2.2e-08 | 114 | 159 | 3 | 42 |
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 ++C+ +e+ ++ C+ + lC +C +H+ H++ p+ Ciclev10008366m 114 VWMCEVCEQAPAAVTCKADAAALCVTCDNDIHSAnplarrHERLPI 159 689*****************************66888888998876 PP | |||||||
3 | CCT | 68.9 | 1.3e-23 | 354 | 398 | 1 | 45 |
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqae 45 Rea++lRY+eKrk+RkFeK+irY+sRKa+Ae+RpR+KGrF+k+ae Ciclev10008366m 354 REARVLRYREKRKNRKFEKTIRYHSRKAYAETRPRIKGRFAKRAE 398 9*****************************************975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50119 | 10.31 | 72 | 116 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 7.2E-8 | 72 | 116 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 9.99E-8 | 76 | 116 | No hit | No description |
PROSITE profile | PS50119 | 10.68 | 112 | 159 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 1.3E-6 | 114 | 159 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 3.79E-8 | 115 | 159 | No hit | No description |
SMART | SM00336 | 2.7E-10 | 117 | 159 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS51017 | 16.559 | 354 | 396 | IPR010402 | CCT domain |
Pfam | PF06203 | 1.1E-17 | 354 | 396 | IPR010402 | CCT domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 430 aa Download sequence Send to blast |
MASNHPRVQL LLVIREQNPK IKNQTSQKLV FAFLHVYSGD QNSKKERKRL YLVMPMGIEL 60 HSVKVISGGW SVAAKPCDTC KAAAAAVFCR VDSAFLCLNC DLRIHNCMNK HARVWMCEVC 120 EQAPAAVTCK ADAAALCVTC DNDIHSANPL ARRHERLPIE PFFDSADSIV KSSAFNFLVP 180 SDQNGGSEFT GASEHDGVDS ASWLIPNSKP GIENAGEMKS GDMFFIDPFI DLNDFDYPNS 240 FQNHHSAGMD SVVPVQTTKP EPIPAQAAAP IPLINNENCF DIDFCRSKLS SFNYQSQSVS 300 SSSLDVGVVP DGNSMSDISY TFGRNMSTGS GADPSVTVSA PGANQASQLC GIDREARVLR 360 YREKRKNRKF EKTIRYHSRK AYAETRPRIK GRFAKRAEAD SEVDRLYKSA ASAAGAYLAD 420 SQYGVVPSF* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ccl.2700 | 0.0 | flower |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006474138.1 | 0.0 | zinc finger protein CONSTANS-LIKE 5 | ||||
Refseq | XP_024033868.1 | 0.0 | zinc finger protein CONSTANS-LIKE 5 | ||||
Swissprot | Q9FHH8 | 1e-122 | COL5_ARATH; Zinc finger protein CONSTANS-LIKE 5 | ||||
TrEMBL | V4U1K5 | 0.0 | V4U1K5_9ROSI; Uncharacterized protein | ||||
STRING | XP_006453443.1 | 0.0 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM7899 | 24 | 35 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G57660.1 | 1e-115 | CONSTANS-like 5 |
Link Out ? help Back to Top | |
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Phytozome | Ciclev10008366m |
Entrez Gene | 18054611 |
Publications ? help Back to Top | |||
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