PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10007946m
Common NameCICLE_v10007946mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family C3H
Protein Properties Length: 540aa    MW: 60769 Da    PI: 7.9433
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10007946mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH23.41e-0791112527
                      --SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   5 lCrffartGtCkyGdrCkFaHgp 27 
                      +C f++  G+C++GdrC+F Hgp
  Ciclev10007946m  91 PCYFYFN-GFCSRGDRCSFLHGP 112
                      79*9**9.*************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF156633.3E-11666No hitNo description
PROSITE profilePS5010310.277635IPR000571Zinc finger, CCCH-type
SMARTSM003560.0086734IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010310.1743763IPR000571Zinc finger, CCCH-type
SMARTSM003560.673962IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.51686113IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.45E-686111IPR000571Zinc finger, CCCH-type
SMARTSM003566.3E-487112IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.2E-691113IPR000571Zinc finger, CCCH-type
PfamPF006421.2E-591112IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 540 aa     Download sequence    Send to blast
MEEELQKRNT DCVYFLASPL TCKKGLDCEY RHNEIARLNP RDCWYWLAGN CINPRCGFRH  60
PPLDAHVTEA PSESVSLPCQ SSIPVNKTSI PCYFYFNGFC SRGDRCSFLH GPDGIAPNGK  120
SSKSASAVTD ALLSENKTSA GDGTGSPPTE IRPNPSEAPL KLAVDVRVQP KGHLLQSAPK  180
RIPERRASPQ ISLSEGETVA VVKSDSMVAA EGFMKTKSHL YTDWSSDEHA DDHVEPEERL  240
ESSPGFDVLV DNENRAENLG FEDDSEYLLA TNREHRELNG HFLGYDFEGP IEYDPMYPES  300
EPHEGETYNV HYYLDNEHIL DKVREYPGRA RERILDSMLS RKRKLFPMKV SVDDCNADLR  360
DYLRKRRVVD GHSIVHSTRR HESSRLMGRI QGRHRGLLLH GRLASEFGKN YIESHGHKGT  420
LPNGANQHGW ARHAKSNILR QHHKGKRLLK RKSHLSAISR KPFSSERRSS QTETAFTGPK  480
SLAEIKEEKK KAEESGGHFG KVGHLSRTLT DFQGPKPLSE ILKEKRRPGT VSDADTWSC*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1449453KRKSH
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024048071.10.0zinc finger CCCH domain-containing protein 34
TrEMBLV4UP760.0V4UP76_9ROSI; Uncharacterized protein
STRINGXP_006450976.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16432710