PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10007413m
Common NameCICLE_v10007413mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family C3H
Protein Properties Length: 880aa    MW: 96883.6 Da    PI: 6.5128
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10007413mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH18.83e-06475495526
                      --SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                       C+++++ G C+ Gd+CkF+H+
  Ciclev10007413m 475 YCHHYLK-GRCQEGDKCKFSHD 495
                      6******.*************7 PP
2zf-CCCH21.25.2e-07530550525
                      --SGGGGTS--TTTTT-SS-S CS
          zf-CCCH   5 lCrffartGtCkyGdrCkFaH 25 
                      +C +f + G+C++Gd+C F+H
  Ciclev10007413m 530 PCENFVAKGFCNRGDNCLFSH 550
                      7******************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010315.798470497IPR000571Zinc finger, CCCH-type
SMARTSM003560.0033471496IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.24E-6471495IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.8E-5474495IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.23500527IPR000571Zinc finger, CCCH-type
SMARTSM003560.021502526IPR000571Zinc finger, CCCH-type
SMARTSM003560.0039528552IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.59E-5529553IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.6E-4530551IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.563530553IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 880 aa     Download sequence    Send to blast
MAQMERSQVE TTSFCFSPHR HLKSETYRAL VQILSHCYDH SQISAAQDSR PGMCGSGELV  60
GPNAAVVDNS LAEKDKAGDE DRWFGDAQIV LDEIQDILQV EENGNLLKQE LAVCDGDYET  120
GNFDEGLGQQ RMLMDELEHI MKGDVIFVHE EDALVNDRQE HVDIQQIVNV ESRSEAELQV  180
DKGDSNLDVP KSFDSSVDRN MDSHASKPAE DSEERNSKLR TNSLEFENEM QQKEMEEEKL  240
VHTNGIIGAH DHRAEDVEVE EGEISGHFEV DEVSIDMIID NAVVSNEKKE DEEQVSKDVT  300
DKTDFPCNEK CGGTEKFSDS TSVCLNAVDH NASGGTVELQ ETVRNETQCK TKIFADGTAP  360
MAIDPDRYNS MPGVGRNKRK ASRDEEGISS FSASLDDSTV QKEVVKQRVT QEQGITTKDK  420
LDSGACNKRK RSALSKKKKA KKKQKERKKR AEKNRQLGVR RLKLPQNLKP KTVKYCHHYL  480
KGRCQEGDKC KFSHDTVPLT KSTKACCHFA RNSCMKGDNC PFDHDLSKYP CENFVAKGFC  540
NRGDNCLFSH KLPPKEQDPP TPSTCTPELK PSPPLYASNL LKPLNNNKVS HQNVDALSNH  600
GKVSSFKNIE QSVAKSILKP PALAPKGISY LFLGKSSFLE ASNLGQGISS PKKSDSSKFA  660
NQTAQIASDS VQSRDETPRR IPVATKGVNF LSFGNRSLED SSGKKLANLF LNRENGAKTS  720
LSNNFGLHET SSSSSCGEND AEVGNATTQI FSNSVQKSND MPKKTQPAIT PRGLNFLSTG  780
KALANNTISN NQARLRSSAG DVINRSLEES PNTPNMSQNS SANPWSLPGS SFTLGHSLDH  840
SAQGYYRSTS NSAQRALEFA TKIEPKVKTN QSTVGTAVK*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1428443RKRSALSKKKKAKKKQ
2435449KKKKAKKKQKERKKR
3436448KKKAKKKQKERKK
4436449KKKAKKKQKERKKR
5437449KKAKKKQKERKKR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006451497.10.0uncharacterized protein LOC18054491
TrEMBLV4UFB30.0V4UFB3_9ROSI; Uncharacterized protein
STRINGXP_006451497.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1724178