PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10007369m
Common NameCICLE_v10007369mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family CPP
Protein Properties Length: 953aa    MW: 103106 Da    PI: 6.2911
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10007369mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR48.41.9e-15509547341
              TCR   3 kkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkee 41 
                      +k+CnCkk++Clk+YC+Cfaag +C+e+C C++C+N+ e
  Ciclev10007369m 509 CKRCNCKKTRCLKLYCDCFAAGIYCAESCACQGCFNRPE 547
                      79**********************************876 PP
2TCR48.12.3e-15591629139
              TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 
                      ++k+gCnCkks ClkkYCeC++a + Cs+ C+Ce+CkN 
  Ciclev10007369m 591 RHKRGCNCKKSMCLKKYCECYQAYVGCSSGCRCENCKNV 629
                      589***********************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011141.7E-15507548IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163434.715508631IPR005172CRC domain
PfamPF036382.5E-11510545IPR005172CRC domain
SMARTSM011143.0E-17591632IPR033467Tesmin/TSO1-like CXC domain
PfamPF036389.3E-11593628IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 953 aa     Download sequence    Send to blast
MDSPEPTTAA VKTPASVAAS AAATNITASS SSSPPVQESP FSNFLNNLSP IKPVSGPHEL  60
QGFLGLNSPL AFTSPQINAL RETSSCKRPP CQQLPTAEMS ENDDGVRKFS ADLGNVEKSD  120
SLLQSGLIVN SQKDNDVRSS VQVQPSGSSG CVDEYLADAV DVDCAHSEHG VSISSKQSFD  180
VLQSSVSGRT DSKKALLKFD DKNDAVSNVD VAVAMIGKAE ESIQGKLTCD IEPNEYPKME  240
SNSSSNHASE KQQSENTSAQ NAGSGRGDES DCPSQSLREP LQTIQTYEDF RENAGAILYG  300
PHDNPMHDPE AGKHQRGMSR RCLQFEEAQL KVTVCSSNPS NKLNDVTSSQ LPTTPVESES  360
PDPSHVDLNI TSGKRQLASL PHPVTPVFPP HHTGKSPLTV SKPSGIGLHL NNLIKSSPEG  420
HGAPVGVNLS STEAGMLESK ASIAASSLIS ESFDDMGPLN WPPPVDPNGT PLTMRKFNSE  480
HADNFEEISQ LSPKKKRKKS SSTVDSDGCK RCNCKKTRCL KLYCDCFAAG IYCAESCACQ  540
GCFNRPEYED TVLETRQQIE SRNPLAFAPK IIPRVTEFPD DGNRFTPSSS RHKRGCNCKK  600
SMCLKKYCEC YQAYVGCSSG CRCENCKNVY GRKEEYVGNE EMVNSRAIPE GVSDSKPERV  660
TNKNEFLHAE LYDLCNLTPL TPSFQFSDHG KDASKSRILS GRYVPSPKSD LTILSSYVKS  720
SRTLNSSDSN EMLLEKSREI VDVDPYGQER DYSSADMVEQ FSPRCHSLVD LCDFNPLLDF  780
PSTAMESSAS SKATGWTNVS RLQLCPRSGS LLSGSSLRWR SSPVTPLTQL GGTKSLQALD  840
SDGRLSGILG DDTPEVLKDA STLIKSVKVS SPSRKRVSPP HGRAHEHGSS SSSMLKSGRK  900
FILKAVPSFP PLTPCIDSKG STGQKSFPHL NPCTDSEEST DQERSNFQEN KQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A1e-1751262914121Protein lin-54 homolog
5fd3_B1e-1751262914121Protein lin-54 homolog
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1494498KKRKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006450481.10.0protein tesmin/TSO1-like CXC 2
TrEMBLV4UMX30.0V4UMX3_9ROSI; Uncharacterized protein
STRINGXP_006450481.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM151961015
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G14770.15e-56TESMIN/TSO1-like CXC 2