PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10007316m
Common NameCICLE_v10007316mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family MYB
Protein Properties Length: 1047aa    MW: 114264 Da    PI: 4.9263
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10007316mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding59.38.4e-193783148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g WT+eEde+l +av+++ g++Wk+Ia+++   Rt+ qc +rwqk+l
  Ciclev10007316m 37 KGQWTPEEDEILRKAVQRFKGKNWKKIAECFK-DRTDVQCLHRWQKVL 83
                     799****************************9.************986 PP
2Myb_DNA-binding65.87.8e-2189135148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +g+W++eEde+++++v+++G++ W+tIa++++ gR +kqc++rw+++l
  Ciclev10007316m  89 KGPWSKEEDEIIIELVNKYGPKKWSTIAQHLP-GRIGKQCRERWHNHL 135
                      79******************************.*************97 PP
3Myb_DNA-binding48.61.9e-15141183145
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                      + +WT+eE++ l++a++ +G++ W+   + ++ gRt++ +k++w+
  Ciclev10007316m 141 KEAWTQEEELALIRAHQIYGNR-WAELTKFLP-GRTDNAIKNHWN 183
                      579*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129418.4713283IPR017930Myb domain
SuperFamilySSF466897.03E-163389IPR009057Homeodomain-like
SMARTSM007171.0E-153685IPR001005SANT/Myb domain
PfamPF002492.2E-163783IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.9E-223890IPR009057Homeodomain-like
CDDcd001672.09E-144083No hitNo description
PROSITE profilePS5129433.52184139IPR017930Myb domain
SuperFamilySSF466899.73E-3286182IPR009057Homeodomain-like
SMARTSM007176.5E-2088137IPR001005SANT/Myb domain
PfamPF002492.8E-1989135IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.7E-2891139IPR009057Homeodomain-like
CDDcd001671.94E-1791135No hitNo description
SMARTSM007172.2E-15140188IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.3E-21140190IPR009057Homeodomain-like
PROSITE profilePS5129419.563140190IPR017930Myb domain
PfamPF002491.8E-13141184IPR001005SANT/Myb domain
CDDcd001674.81E-12143183No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003713Molecular Functiontranscription coactivator activity
Sequence ? help Back to Top
Protein Sequence    Length: 1047 aa     Download sequence    Send to blast
MESDRVISAP SDGLGDGGQR MRSMHGRTSG PTRRSTKGQW TPEEDEILRK AVQRFKGKNW  60
KKIAECFKDR TDVQCLHRWQ KVLNPELVKG PWSKEEDEII IELVNKYGPK KWSTIAQHLP  120
GRIGKQCRER WHNHLNPAIN KEAWTQEEEL ALIRAHQIYG NRWAELTKFL PGRTDNAIKN  180
HWNSSVKKKL DSYLASGLLE QFQGLPLVGH QNQPLPSSSQ RMQSSGDESC PKGGTEGEEV  240
SECSQESAGV AHTHSAGNVV LQTRDQFIFS EESCPGKDRS SSPASCTEQY YTSLEDVTFS  300
IPEIPCEAGC SSKFPEQSFV NNAGSFASTP YQFNLQDVSN FSALELGHQS AGLPAHCISS  360
HEGHEVANVP FQSSMGLSVP SSAGNLAAGS AKPENMLISD DECCRVLFAE AMKDGCFSLE  420
NLPQGLNIVD SLLCRSLDVP ISESDRTSSS QAFCPLRPEL LGTSCSQSFL SGPMLLLPDD  480
SGFLYGREPS QLNCHSYGTQ EQELNTNGQA GFICTNESTN SPCDDGTDNS GLQESSYLPK  540
DSLKLVPINT FGSGADAMIS CPSVEVKQEA QTEQQDSGAL CYEPPRFPSL DIPFFSCDLI  600
QSGNDMLQEY SPLGIRQLMS SMNCITPFRL WDSPSRDGSP EAVLKSAAKT FTGTPSILKK  660
RNRDLLSPLS DRRNDKKLET DLTSCLARDF SRLDVMFDDG GANKASLLSP SSNQKRNSGS  720
FIEDKENLSG GQEKDKDIIV KDKTSEKDFD GSNSQENMKP KTVDTDSKTK IDADAASETV  780
KKPASILVEH NMNDLLFSPD QVGSKANRAL GSLARTPRTQ YCKGFGVTAN QGFSSEQSPR  840
NTSSPAVCKR SNESSAGAVA SVQAIPSLAL TGETTTTAGN DAGTENYNIF GETPFKRSIE  900
SPSAWKSPWF INSFVPGPRV DTEISIEDIG YFMSPGDRSY DALGLMKQLS EHTAAAYADA  960
LEVLGGESSE TLVNERNSKS PSMDQGIEHL PENENESSHL DSNVMMERRT LDFSECGTPA  1020
KGTETRKSLT GVNFSSPSSY LLKGCR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C2e-71371906159MYB PROTO-ONCOGENE PROTEIN
1h89_C2e-71371906159MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00466DAPTransfer from AT4G32730Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006450634.10.0transcription factor MYB3R-1 isoform X1
RefseqXP_024034229.10.0transcription factor MYB3R-1 isoform X1
TrEMBLV4WBV50.0V4WBV5_9ROSI; Uncharacterized protein
STRINGXP_006450634.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM46742649
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32730.20.0Homeodomain-like protein