PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10007133m
Common NameCICLE_v10007133mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family ERF
Protein Properties Length: 138aa    MW: 15534 Da    PI: 6.9763
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10007133mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.21.3e-201061256
              AP2  2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkklege 56
                     +y+GVr+++ +g+++AeIrd    + + +r++lg+f taeeAa+a+++a+ +++g+
  Ciclev10007133m 10 KYRGVRRRP-WGKFAAEIRDS---NrHGQRVWLGTFNTAEEAARAYDRAAYSMRGH 61
                     8********.**********4...3234**************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000184.18E-171069No hitNo description
PfamPF008473.3E-161061IPR001471AP2/ERF domain
PROSITE profilePS5103223.6961068IPR001471AP2/ERF domain
SuperFamilySSF541717.85E-241070IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.105.8E-321070IPR001471AP2/ERF domain
SMARTSM003801.2E-341074IPR001471AP2/ERF domain
PRINTSPR003671.3E-111122IPR001471AP2/ERF domain
PRINTSPR003671.3E-113450IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 138 aa     Download sequence    Send to blast
MDEEPRGEVK YRGVRRRPWG KFAAEIRDSN RHGQRVWLGT FNTAEEAARA YDRAAYSMRG  60
HLAILNFPHE YPRASHQGNS ASFGSSSTGS SSSSMRGNVE NQSEESGRGK QVIELEYLDD  120
NLLDELLEQE EKRNKKG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A8e-3811351127Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006420201.12e-97ethylene-responsive transcription factor ERF096
SwissprotQ9LTC52e-42ERF98_ARATH; Ethylene-responsive transcription factor ERF098
TrEMBLV4S9554e-96V4S955_9ROSI; Uncharacterized protein
STRINGXP_006420201.17e-97(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43410.11e-26ERF family protein
Publications ? help Back to Top
  1. Van den Broeck L, et al.
    From network to phenotype: the dynamic wiring of an Arabidopsis transcriptional network induced by osmotic stress.
    Mol. Syst. Biol., 2017. 13(12): p. 961
    [PMID:29269383]