PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10007101m
Common NameCICLE_v10007101mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family C2H2
Protein Properties Length: 282aa    MW: 31222.9 Da    PI: 8.4752
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10007101mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H210.90.0015727323
                     ETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2  3 CpdCgksFsrksnLkrHirtH 23
                     C++C+++F +   +  H+r+H
  Ciclev10007101m  7 CKICNRRFANGKAMGGHMRSH 27
                     *******************99 PP
2zf-C2H211.10.0013171193123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      ykC+ C+k F++   L  H  +H
  Ciclev10007101m 171 YKCKTCKKEFRSYQALGGHKASH 193
                      9***********99998888877 PP
3zf-C2H212.90.00033220242123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      +kCp C+k+F +   L  H + H
  Ciclev10007101m 220 FKCPFCDKVFDSGQALGGHKKIH 242
                      89*********999999999888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576679.05E-5333No hitNo description
PfamPF139127.6E-8427IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.159532IPR007087Zinc finger, C2H2
SMARTSM003550.21527IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280727IPR007087Zinc finger, C2H2
SuperFamilySSF576679.27E-9170242No hitNo description
PROSITE profilePS5015710.076171198IPR007087Zinc finger, C2H2
PfamPF139124.1E-12171195IPR007087Zinc finger, C2H2
SMARTSM003550.054171193IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280173193IPR007087Zinc finger, C2H2
PfamPF139123.8E-9219242IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.076220242IPR007087Zinc finger, C2H2
SMARTSM003550.008220242IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280222242IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 282 aa     Download sequence    Send to blast
MDKHRICKIC NRRFANGKAM GGHMRSHFAK HPISSSNINP SPPKYPSSSS SLSNMQTYRS  60
VNNRPFSGLE DESEAESSRN LTKARSKRPL RTIESVSNSV TENFLSDREV AMCLLKLSKD  120
NWLQKDKQVV VAEAVVDEDE YVRGKSDDGD NDEEEDKEED ESSLVSRTNK YKCKTCKKEF  180
RSYQALGGHK ASHKKIKIHH NGSSDAAAAG DAVVMDQRVF KCPFCDKVFD SGQALGGHKK  240
IHFTYLATPI TKITSSAKSS GAKFIDLNLP APEDDSEVSQ V*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024044148.11e-135zinc finger protein ZAT9
TrEMBLV4RL220.0V4RL22_9ROSI; Uncharacterized protein
STRINGXP_006421633.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16232814
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60580.14e-25C2H2-like zinc finger protein