PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10006902m
Common NameCICLE_v10006902mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family HSF
Protein Properties Length: 361aa    MW: 41845.9 Da    PI: 5.3866
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10006902mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind114.37.9e-36401322103
                      HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXX CS
     HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkelle 95 
                      Fl+k+y+i+ed +++++isws+ +nsfvv+d++ f+ ++LpkyFkh+nf+SFvRQLn+YgF+kv+ ++         weF+++ F +g+++ll+
  Ciclev10006902m  40 FLTKTYDIVEDCNTNHIISWSRGSNSFVVWDPQAFSITLLPKYFKHNNFSSFVRQLNTYGFRKVDPDR---------WEFANEGFLRGQRNLLK 124
                      9****************************************************************999.........***************** PP

                      XXXXXXXX CS
     HSF_DNA-bind  96 kikrkkse 103
                      +i+r+k++
  Ciclev10006902m 125 NIRRRKTT 132
                      *****986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467854.99E-3536129IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.101.1E-3836129IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004155.7E-5936129IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000568.2E-194063IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004472.9E-3140129IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000568.2E-197890IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434079103IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000568.2E-1991103IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 361 aa     Download sequence    Send to blast
MHPTGRVERE EFIGASSSSA SYSAPPQPRE GLHDAGPPPF LTKTYDIVED CNTNHIISWS  60
RGSNSFVVWD PQAFSITLLP KYFKHNNFSS FVRQLNTYGF RKVDPDRWEF ANEGFLRGQR  120
NLLKNIRRRK TTQSSASQQA LDACVEVGRF GLDGEVDRLR RDKQVLMMEL VKLRHQQQNT  180
REYLQLMEQK LRRTEMKQQH MMSFLARAMQ NPSFVQQLAQ QKDRRKEFED MINRKRRRHI  240
DQGPGEIDVG DLGQGEVDIP FVKIEPEEYG DLAELGLSEL DRLAMDMQAR LSERQRNPDD  300
EFVERGEEHG SKNKFTIDQR FWEDFLNEDV EEEMLAGEGE GDENVRVLVE QLGFLSSSPK  360
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A3e-263513412125Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1223237RRKEFEDMINRKRRR
2233237RKRRR
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00371DAPTransfer from AT3G22830Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006420034.10.0heat stress transcription factor A-6b
SwissprotQ9LUH81e-133HFA6B_ARATH; Heat stress transcription factor A-6b
TrEMBLA0A2H5PP010.0A0A2H5PP01_CITUN; Uncharacterized protein
TrEMBLV4U2230.0V4U223_9ROSI; Uncharacterized protein
STRINGXP_006420034.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM12562899
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22830.11e-135heat shock transcription factor A6B