PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10006897m
Common NameCICLE_v10006897mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family MYB
Protein Properties Length: 314aa    MW: 35168.7 Da    PI: 6.9483
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10006897mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding538e-171966148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g W++eEd++l+++v q+G ++W++++   g+ R +k+c++rw +yl
  Ciclev10006897m 19 KGLWSPEEDQRLKNYVLQHGHPCWSSVPINAGLQRNGKSCRLRWINYL 66
                     678*******************************************97 PP
2Myb_DNA-binding46.77.6e-1572117148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg +  +E+e ++ ++++lG++ W+ Ia++++ gRt++++k++w+++l
  Ciclev10006897m  72 RGVFNMQEEETILTVHRLLGNK-WSQIAQHLP-GRTDNEIKNYWHSHL 117
                      7888999***************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.605.8E-211368IPR009057Homeodomain-like
PROSITE profilePS5129424.6211470IPR017930Myb domain
SuperFamilySSF466893.67E-2716113IPR009057Homeodomain-like
SMARTSM007176.2E-111868IPR001005SANT/Myb domain
PfamPF002495.5E-141966IPR001005SANT/Myb domain
CDDcd001671.13E-92266No hitNo description
Gene3DG3DSA:1.10.10.602.1E-2469121IPR009057Homeodomain-like
PROSITE profilePS5129419.82571121IPR017930Myb domain
SMARTSM007172.2E-1371119IPR001005SANT/Myb domain
PfamPF002491.6E-1372117IPR001005SANT/Myb domain
CDDcd001671.16E-978117No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009751Biological Processresponse to salicylic acid
GO:0010018Biological Processfar-red light signaling pathway
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 314 aa     Download sequence    Send to blast
MGCKSSEKPI AKPKPKHRKG LWSPEEDQRL KNYVLQHGHP CWSSVPINAG LQRNGKSCRL  60
RWINYLRPGL KRGVFNMQEE ETILTVHRLL GNKWSQIAQH LPGRTDNEIK NYWHSHLKKK  120
LAKLEEMEAA NATTPSSENM ESSTSPNNNP STRSSSYESL HHMEKSSAGS TDQCATQGQK  180
SCLPKLLFAE WLSLDHANDG SFANSFEQVA SKEGFNNNNN NNNNNNNNNN NNNQNSNLVQ  240
DSSDTFMNGY LSNEGAFGGD FIHNGFNNSF VDEMLSSRFK FEDHQFSGIG FVDSISGDDV  300
CSALNMNNDV MYI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A4e-22151213108B-MYB
1h8a_C4e-221512123128MYB TRANSFORMING PROTEIN
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed at very low level. Expressed in cauline leaves. {ECO:0000269|PubMed:11581165}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that promotes photomorphogenesis in the light by participating in the transmission of phytochrome A (phyA) signals to downstream responses (PubMed:11581165, PubMed:19482971). Probably acts by activating expression of light-induced genes. In darkness, its degradation prevents the activation of light-induced genes (PubMed:11581165). {ECO:0000269|PubMed:11581165, ECO:0000269|PubMed:19482971}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By hormones or elicitors treatment. By exposure to abiotic stress. {ECO:0000269|PubMed:9839469}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015389492.10.0transcription factor LAF1-like isoform X2
SwissprotQ9M0K49e-62LAF1_ARATH; Transcription factor LAF1
TrEMBLV4S8J80.0V4S8J8_9ROSI; Uncharacterized protein
STRINGXP_006421905.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25560.11e-56myb domain protein 18
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]