PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ciclev10006752m | ||||||||
Common Name | CICLE_v10006752mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | MYB | ||||||||
Protein Properties | Length: 345aa MW: 38841 Da PI: 7.2584 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 54.4 | 2.8e-17 | 13 | 60 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g W++eEde+l++ ++ +G g+W+++++ g+ R++k+c++rw +yl Ciclev10006752m 13 KGLWSPEEDEKLLKHITAHGHGSWSSVPKLAGLQRCGKSCRLRWINYL 60 678*******************************************97 PP | |||||||
2 | Myb_DNA-binding | 58.4 | 1.7e-18 | 66 | 109 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg++T+eE+++++d+++ lG++ W+ Ia++++ gRt++++k++w++ Ciclev10006752m 66 RGSFTEEEEQIIIDVHRILGNR-WAQIAKHLP-GRTDNEVKNYWNS 109 89********************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 4.9E-26 | 5 | 63 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 17.978 | 8 | 60 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.27E-30 | 10 | 107 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.3E-12 | 12 | 62 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.3E-15 | 13 | 60 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 4.90E-11 | 16 | 60 | No hit | No description |
PROSITE profile | PS51294 | 28.122 | 61 | 115 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.2E-26 | 64 | 115 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.9E-17 | 65 | 113 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 8.3E-17 | 66 | 109 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.50E-13 | 68 | 108 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 345 aa Download sequence Send to blast |
MGHRCCSKQK VKKGLWSPEE DEKLLKHITA HGHGSWSSVP KLAGLQRCGK SCRLRWINYL 60 RPDLRRGSFT EEEEQIIIDV HRILGNRWAQ IAKHLPGRTD NEVKNYWNSC IKKKLMSKGL 120 DPKTHILMPS HQRAAASSKI ACNIQLPISS RAFTVSSSQI MSNIVSMEII RPPVLTLPAP 180 TDQFSLLQPT AIPMPPASEY QNPNFVWNAG DQNSQDYSTN FPNYVSSSVD HLRNGPMSSP 240 PCSSLMNPPG FGLTDENYCM WGTNTNIEVP SLEAKLQQQR EKEKNICDRQ APQMEKIDDE 300 ANMDCSFDSS SFDHHLDFVD STLMAGAMCR DFSSFSTDDF AWNF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 1e-32 | 13 | 115 | 7 | 108 | B-MYB |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00350 | DAP | Transfer from AT3G12720 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006422299.1 | 0.0 | transcription factor MYB41 | ||||
Refseq | XP_006493796.1 | 0.0 | transcription factor MYB41 | ||||
TrEMBL | A0A067F5V6 | 0.0 | A0A067F5V6_CITSI; Uncharacterized protein | ||||
TrEMBL | V4U8D9 | 0.0 | V4U8D9_9ROSI; Uncharacterized protein | ||||
STRING | XP_006493796.1 | 0.0 | (Citrus sinensis) | ||||
STRING | XP_006422299.1 | 0.0 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM7955 | 25 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G12720.1 | 2e-88 | myb domain protein 67 |
Link Out ? help Back to Top | |
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Phytozome | Ciclev10006752m |
Entrez Gene | 18031292 |