PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ciclev10006714m | ||||||||
Common Name | CICLE_v10006714mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | MYB_related | ||||||||
Protein Properties | Length: 205aa MW: 23397.6 Da PI: 10.198 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 42.7 | 1.3e-13 | 72 | 118 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +++WT++E+++++ + k lG+g+Wk I++ + ++Rt q+ s+ qky Ciclev10006714m 72 KLPWTEDEHQKFLMGLKWLGKGDWKGISKNFVTTRTQTQIASHAQKY 118 689*******************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 18.149 | 67 | 123 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 7.9E-17 | 68 | 123 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.4E-17 | 70 | 122 | IPR006447 | Myb domain, plants |
SMART | SM00717 | 1.7E-8 | 71 | 121 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.1E-11 | 72 | 120 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 7.3E-11 | 73 | 118 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 9.58E-7 | 74 | 119 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 205 aa Download sequence Send to blast |
MCRSKGCVKL FGVNILEQKQ DHESNRSSSV TSFANLHYLE ERNVQVNAES LCEGQQLNFK 60 RRKVVREKRK RKLPWTEDEH QKFLMGLKWL GKGDWKGISK NFVTTRTQTQ IASHAQKYFN 120 RQASSSDNKN RRTSLFDMPL KEAYQIHCNG RMPAGICDNF SPCAPQLFQR SISRETDILE 180 LKIGPPQSPE MNSSSSQIFG VAVV* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 59 | 70 | KRRKVVREKRKR |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015389419.1 | 1e-126 | transcription factor MYBS2-like | ||||
TrEMBL | V4SCS3 | 1e-152 | V4SCS3_9ROSI; Uncharacterized protein | ||||
STRING | XP_006421516.1 | 1e-153 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM32789 | 2 | 2 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G56840.1 | 7e-18 | MYB_related family protein |
Link Out ? help Back to Top | |
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Phytozome | Ciclev10006714m |
Entrez Gene | 18031986 |