PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10006666m
Common NameCICLE_v10006666mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family ERF
Protein Properties Length: 307aa    MW: 33769.3 Da    PI: 4.5308
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10006666mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP225.82.7e-08648853
              AP2  8 wdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkl 53
                     ++++ ++W A++       k+ k ++lg+f  +eeAa a++ a+ + 
  Ciclev10006666m  6 RNPNFKKWQARLGKT----KQtKAIYLGTFENEEEAAVAYDIAAIRV 48
                     688889*****5442....235*********************9886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103213.511158IPR001471AP2/ERF domain
SuperFamilySSF541713.66E-12759IPR016177DNA-binding domain
SMARTSM003804.7E-14964IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.4E-131060IPR001471AP2/ERF domain
CDDcd000181.42E-141260No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 307 aa     Download sequence    Send to blast
MLLMSRNPNF KKWQARLGKT KQTKAIYLGT FENEEEAAVA YDIAAIRVKG VEAITNFDKS  60
QYDVNGITAS EKIPIGKGVS RFIKENSVND VLIMKKRRTS RLPTLCLKRD SSHQVMINPQ  120
LGSSSQSLAS SEEQRNQVNQ MTIDDFSHQH PNEFQTNNSS ADANLGSGLG FSSDDGVLEG  180
LVAMINDGEN QQFTQQVLDD YPSSSLMKAY ENPNSLFVDG YQNPSNFPHQ VHQNDLQTNN  240
PSFLTHQLGA DGSGSASRIN EGVSSDGIME GCSTLMGNED EDFAFDDFLD MQQMSTDGNF  300
PKMPSP*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006421472.20.0AP2-like ethylene-responsive transcription factor PLT1
TrEMBLV4S3430.0V4S343_9ROSI; Uncharacterized protein
STRINGXP_006421472.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM3278422
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20840.13e-22AP2 family protein