PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10006460m
Common NameCICLE_v10006460mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family ERF
Protein Properties Length: 301aa    MW: 33220 Da    PI: 5.2795
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10006460mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.19.2e-184290355
              AP2  3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                     + GVr+++ +gr++AeIrdp +   + r++lg+f+tae+Aa a+++a+++++g
  Ciclev10006460m 42 FLGVRRRP-WGRYAAEIRDPAT---KERHWLGTFDTAEDAALAYDRAARSMRG 90
                     56******.**********843...4*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.14E-284197No hitNo description
PROSITE profilePS5103220.5474198IPR001471AP2/ERF domain
SMARTSM003804.7E-3441104IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.109.2E-294298IPR001471AP2/ERF domain
PRINTSPR003677.3E-84253IPR001471AP2/ERF domain
SuperFamilySSF541711.37E-204299IPR016177DNA-binding domain
PfamPF008479.4E-114490IPR001471AP2/ERF domain
PRINTSPR003677.3E-86480IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 301 aa     Download sequence    Send to blast
MDFSNLRTNS SSVPSPTKTK RKQQKQQQQQ QQNHMRQDEI RFLGVRRRPW GRYAAEIRDP  60
ATKERHWLGT FDTAEDAALA YDRAARSMRG SKARTNFVYS DMPAGSSVTS IISPDHYQPP  120
QHDDVVSSLF AVTAAAAADT NTNNNNINQL FNFSDQFSAE TIRRSTTYKP ITSVMDAADQ  180
ADDHQTYTNG DFCELPPLPP DASSSSCYYY NYHDPAAAVA GLMGNSDLGF GAWNDQTTGF  240
DYSSSSSFST TTTGVQYFMQ EQQQHHSGQI FGGMPSVSSD AVTDGFDFSS SSSSSSTYFF  300
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-204297359ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006420827.10.0ethylene-responsive transcription factor LEP
TrEMBLV4S1B50.0V4S1B5_9ROSI; Uncharacterized protein
STRINGXP_006420827.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13910.11e-32ERF family protein