PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Ciclev10006374m | ||||||||
Common Name | CICLE_v10006165mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
|
||||||||
Family | MYB_related | ||||||||
Protein Properties | Length: 73aa MW: 8471.53 Da PI: 8.5458 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 23 | 1.8e-07 | 4 | 51 | 3 | 46 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT....TTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmg....kgRtlkqcksrwqk 46 +W++ E + l +v+++G g+W+ I r ++Rt k++ +rw k Ciclev10006374m 4 AWSEKELDALWVGVRRHGQGNWACILRDSTlkfsEHRTSKDLSERWEK 51 8*********************************************76 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 7.155 | 1 | 53 | IPR017877 | Myb-like domain |
Gene3D | G3DSA:1.10.10.60 | 1.6E-8 | 4 | 54 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 3.82E-11 | 4 | 54 | IPR009057 | Homeodomain-like |
Pfam | PF13921 | 4.5E-5 | 5 | 58 | No hit | No description |
CDD | cd11660 | 4.73E-11 | 5 | 49 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 73 aa Download sequence Send to blast |
MMEAWSEKEL DALWVGVRRH GQGNWACILR DSTLKFSEHR TSKDLSERWE KEVRQISMIE 60 SSRSRTNSLF GS* |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Chromatin-remodeling protein that binds DNA through histones and regulates gene transcription. May specifically recognize and bind trimethylated 'Lys-27' (H3K27me3) and non-methylated 'Lys-4' of histone H3 (By similarity). Probable chromatin remodeling factor. {ECO:0000250|UniProtKB:Q8TDI0, ECO:0000303|PubMed:16547115}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_008795790.1 | 2e-19 | protein CHROMATIN REMODELING 4-like isoform X1 | ||||
Refseq | XP_008795791.1 | 2e-19 | protein CHROMATIN REMODELING 4-like isoform X1 | ||||
Refseq | XP_008795792.1 | 1e-19 | protein CHROMATIN REMODELING 4-like isoform X2 | ||||
Refseq | XP_008795793.1 | 1e-19 | protein CHROMATIN REMODELING 4-like isoform X3 | ||||
Swissprot | F4KBP5 | 6e-17 | CHR4_ARATH; Protein CHROMATIN REMODELING 4 | ||||
TrEMBL | V4RML1 | 2e-44 | V4RML1_9ROSI; Uncharacterized protein | ||||
STRING | XP_006493799.1 | 8e-37 | (Citrus sinensis) | ||||
STRING | XP_006422272.1 | 4e-39 | (Citrus clementina) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G72740.2 | 8e-09 | MYB_related family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Ciclev10006374m |
Entrez Gene | 18031647 |
Publications ? help Back to Top | |||
---|---|---|---|
|