PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Ciclev10005676m | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
|
||||||||
Family | C3H | ||||||||
Protein Properties | Length: 259aa MW: 28065.1 Da PI: 8.7313 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 27.7 | 4.7e-09 | 2 | 22 | 7 | 27 |
SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 7 rffartGtCkyGdrCkFaHgp 27 ++f++t Ck+G++CkF+H++ Ciclev10005676m 2 QYFLKTQRCKFGSKCKFNHPK 22 59*****************96 PP | |||||||
2 | zf-CCCH | 38.1 | 2.6e-12 | 45 | 69 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C f++++GtCk+G++CkF H++ Ciclev10005676m 45 EPPCAFYLKNGTCKFGATCKFDHPK 69 79*********************96 PP | |||||||
3 | zf-CCCH | 37.8 | 3.3e-12 | 127 | 149 | 5 | 27 |
--SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHgp 27 C+f+++tG CkyG++C+++H++ Ciclev10005676m 127 DCPFYLKTGSCKYGSTCRYNHPE 149 7********************96 PP | |||||||
4 | zf-CCCH | 39.8 | 7.7e-13 | 211 | 232 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C+++++tG Ck+G++CkF+H+ Ciclev10005676m 211 ECDYYMKTGVCKFGEKCKFHHP 232 7********************8 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 11.066 | 1 | 23 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.7E-6 | 2 | 22 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 8.3 | 2 | 22 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.3E-4 | 3 | 22 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.995 | 42 | 70 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 4.2E-6 | 42 | 69 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 8.7E-10 | 45 | 69 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 8.5E-6 | 45 | 70 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 7.3E-5 | 47 | 68 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.018 | 122 | 150 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.0E-5 | 122 | 149 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 7.6E-10 | 127 | 149 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 5.63E-6 | 127 | 150 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 4.5E-5 | 128 | 149 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.028 | 206 | 234 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 5.8E-6 | 206 | 233 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 3.79E-7 | 208 | 234 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.6E-10 | 211 | 232 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 7.5E-6 | 212 | 232 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003723 | Molecular Function | RNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 259 aa Download sequence Send to blast |
MQYFLKTQRC KFGSKCKFNH PKDKLIGSSD SGNGDVSALP ERPSEPPCAF YLKNGTCKFG 60 ATCKFDHPKD FQLPSVGQEN GIGEQNESVI KTDETTGLLN PGMSLFSHAP AMLHNSKGLP 120 IRPGELDCPF YLKTGSCKYG STCRYNHPER TAINPPAAAI VHPLITSPAA SLGISVVSPA 180 ASLYQTIDPR LAQATLGVSP SLYPQRPGQM ECDYYMKTGV CKFGEKCKFH HPIDRSAAKT 240 PSQETVKLTL AGLPRREV* |
Expression -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Highly expressed in inflorescences, at intermediate levels in leaves and stems and at lower levels in roots. {ECO:0000269|PubMed:11595801}. |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Involved in flower development (PubMed:11595801, PubMed:12530963). Functions in floral reproductive organ identity by binding AGAMOUS (AG) pre-mRNA and promoting its processing. Functions in association with HUA2 and HEN4 (PubMed:12530963). {ECO:0000269|PubMed:11595801, ECO:0000269|PubMed:12530963}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_006422325.2 | 0.0 | zinc finger CCCH domain-containing protein 37 isoform X1 | ||||
Refseq | XP_006493722.1 | 0.0 | zinc finger CCCH domain-containing protein 37 isoform X1 | ||||
Refseq | XP_006493723.1 | 0.0 | zinc finger CCCH domain-containing protein 37 isoform X2 | ||||
Refseq | XP_024047902.1 | 0.0 | zinc finger CCCH domain-containing protein 37 isoform X2 | ||||
Swissprot | Q941Q3 | 1e-100 | C3H37_ARATH; Zinc finger CCCH domain-containing protein 37 | ||||
TrEMBL | A0A2H5NQS5 | 0.0 | A0A2H5NQS5_CITUN; Uncharacterized protein | ||||
STRING | XP_006493722.1 | 0.0 | (Citrus sinensis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G12680.1 | 1e-102 | floral homeotic protein (HUA1) |
Link Out ? help Back to Top | |
---|---|
Phytozome | Ciclev10005676m |