PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ciclev10005499m | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | C3H | ||||||||
Protein Properties | Length: 307aa MW: 33372.1 Da PI: 8.082 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 26 | 1.6e-08 | 1 | 17 | 10 | 26 |
GGTS--TTTTT-SS-SS CS zf-CCCH 10 artGtCkyGdrCkFaHg 26 ++t tCk+Gd+CkF H+ Ciclev10005499m 1 MQTRTCKFGDTCKFDHP 17 89**************8 PP | |||||||
2 | zf-CCCH | 35.6 | 1.5e-11 | 44 | 70 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ C++f++t Ck+G++CkF+H++ Ciclev10005499m 44 PGEPDCPYFLKTQRCKFGSKCKFNHPK 70 5789*********************96 PP | |||||||
3 | zf-CCCH | 37.8 | 3.3e-12 | 93 | 117 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C f++++GtCk+G++CkF H++ Ciclev10005499m 93 EPPCAFYLKNGTCKFGATCKFDHPK 117 79*********************96 PP | |||||||
4 | zf-CCCH | 37.4 | 4.1e-12 | 175 | 197 | 5 | 27 |
--SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHgp 27 C+f+++tG CkyG++C+++H++ Ciclev10005499m 175 DCPFYLKTGSCKYGSTCRYNHPE 197 7********************96 PP | |||||||
5 | zf-CCCH | 39.5 | 9.7e-13 | 259 | 280 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C+++++tG Ck+G++CkF+H+ Ciclev10005499m 259 ECDYYMKTGVCKFGEKCKFHHP 280 7********************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 9.967 | 1 | 19 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 4.3E-6 | 1 | 17 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 57 | 2 | 18 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.507 | 43 | 71 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 9.3E-6 | 43 | 70 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 5.4E-9 | 45 | 70 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 7.2E-6 | 48 | 72 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 3.7E-5 | 49 | 70 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.995 | 90 | 118 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 4.2E-6 | 90 | 117 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.09E-5 | 93 | 118 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.1E-9 | 93 | 117 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 9.1E-5 | 95 | 116 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.0E-5 | 170 | 197 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.018 | 170 | 198 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 9.5E-10 | 175 | 197 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 7.2E-6 | 175 | 198 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 5.6E-5 | 176 | 197 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 5.8E-6 | 254 | 281 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.028 | 254 | 282 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 4.84E-7 | 257 | 282 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 3.3E-10 | 259 | 280 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 9.4E-6 | 260 | 280 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003723 | Molecular Function | RNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 307 aa Download sequence Send to blast |
MQTRTCKFGD TCKFDHPIWV PEGGIPDWKE VPVIASSESL PERPGEPDCP YFLKTQRCKF 60 GSKCKFNHPK DKLIGSSDSG NGDVSALPER PSEPPCAFYL KNGTCKFGAT CKFDHPKDFQ 120 LPSVGQENGI GEQNESVIKT DETTGLLNPG MSLFSHAPAM LHNSKGLPIR PGELDCPFYL 180 KTGSCKYGST CRYNHPERTA INPPAAAIVH PLITSPAASL GISVVSPAAS LYQTIDPRLA 240 QATLGVSPSL YPQRPGQMEC DYYMKTGVCK FGEKCKFHHP IDRSAAKTPS QETVKLTLAG 300 LPRREV* |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Highly expressed in inflorescences, at intermediate levels in leaves and stems and at lower levels in roots. {ECO:0000269|PubMed:11595801}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in flower development (PubMed:11595801, PubMed:12530963). Functions in floral reproductive organ identity by binding AGAMOUS (AG) pre-mRNA and promoting its processing. Functions in association with HUA2 and HEN4 (PubMed:12530963). {ECO:0000269|PubMed:11595801, ECO:0000269|PubMed:12530963}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681800 | 6e-32 | LN681800.1 Cucumis melo genomic scaffold, anchoredscaffold00017. | |||
GenBank | LN713255 | 6e-32 | LN713255.1 Cucumis melo genomic chromosome, chr_1. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006422325.2 | 0.0 | zinc finger CCCH domain-containing protein 37 isoform X1 | ||||
Refseq | XP_006493722.1 | 0.0 | zinc finger CCCH domain-containing protein 37 isoform X1 | ||||
Swissprot | Q941Q3 | 1e-134 | C3H37_ARATH; Zinc finger CCCH domain-containing protein 37 | ||||
TrEMBL | A0A067F2C4 | 0.0 | A0A067F2C4_CITSI; Uncharacterized protein | ||||
STRING | XP_006493722.1 | 0.0 | (Citrus sinensis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G12680.1 | 1e-137 | floral homeotic protein (HUA1) |
Link Out ? help Back to Top | |
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Phytozome | Ciclev10005499m |