PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10005465m
Common NameCICLE_v10005465mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family NAC
Protein Properties Length: 316aa    MW: 36160 Da    PI: 6.9065
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10005465mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM156.21.4e-48241522128
              NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 
                       pGfrFhPtdeelv +yL++kv++k+l++ e ik++diyk++PwdLpk  ++ ++e yfF+kr +ky+++ r+nr+t sg+Wkatg dk+v+s 
  Ciclev10005465m  24 LPGFRFHPTDEELVGFYLRRKVDKKPLSI-ELIKQIDIYKHDPWDLPKISSTPDNEGYFFCKRGRKYRNSVRPNRVTGSGFWKATGIDKPVYSD 116
                      59***************************.89***************777778899*************************************9 PP

              NAM  96 ...kgelvglkktLvfykgrapkgektdWvmheyrl 128
                         ++  +glkktLv+y+g+a kg+ktdW+m+e+rl
  Ciclev10005465m 117 ggeGQDCIGLKKTLVYYRGTAGKGTKTDWMMNEFRL 152
                      6655555***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.48E-5323184IPR003441NAC domain
PROSITE profilePS5100551.19523184IPR003441NAC domain
PfamPF023651.7E-2425152IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 316 aa     Download sequence    Send to blast
MNGQNIKIDH HCYRDDHEAD DRQLPGFRFH PTDEELVGFY LRRKVDKKPL SIELIKQIDI  60
YKHDPWDLPK ISSTPDNEGY FFCKRGRKYR NSVRPNRVTG SGFWKATGID KPVYSDGGEG  120
QDCIGLKKTL VYYRGTAGKG TKTDWMMNEF RLPSDDRSGN TNVTNAKTTL PEAEVWTICR  180
VFKRNVSSRK YTNWKEQSSA RRQSSVTELP SATITYSTES NNQEEAYISF ENPGIHRHTD  240
NLKPTAVHQI NEISQFSSVE QLSGNIPSNP YESMASSSSH PHANGNDFHE LFTQENWDEL  300
RSVVEFALEC PNFSF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A3e-452519019171NO APICAL MERISTEM PROTEIN
1ut4_B3e-452519019171NO APICAL MERISTEM PROTEIN
1ut7_A3e-452519019171NO APICAL MERISTEM PROTEIN
1ut7_B3e-452519019171NO APICAL MERISTEM PROTEIN
3swm_A3e-452519022174NAC domain-containing protein 19
3swm_B3e-452519022174NAC domain-containing protein 19
3swm_C3e-452519022174NAC domain-containing protein 19
3swm_D3e-452519022174NAC domain-containing protein 19
3swp_A3e-452519022174NAC domain-containing protein 19
3swp_B3e-452519022174NAC domain-containing protein 19
3swp_C3e-452519022174NAC domain-containing protein 19
3swp_D3e-452519022174NAC domain-containing protein 19
4dul_A3e-452519019171NAC domain-containing protein 19
4dul_B3e-452519019171NAC domain-containing protein 19
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, root caps, cotyledons, tips and margin of young leaves, senescent regions of fully expanded leaves and floral tissues, including old sepals, petals, staments, mature anthers and pollen grains. Not detected in the abscission zone of open flowers, emerging lateral roots and root meristematic zones. {ECO:0000269|PubMed:22345491}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the 5'- RRYGCCGT-3' consensus core sequence. Central longevity regulator. Negative regulator of leaf senescence. Modulates cellular H(2)O(2) levels and enhances tolerance to various abiotic stresses through the regulation of DREB2A. {ECO:0000269|PubMed:22345491}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00353DAPTransfer from AT3G12910Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by H(2)O(2), paraquat, ozone, 3-aminotriazole and salt stress. {ECO:0000269|PubMed:22345491}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006490488.10.0transcription factor JUNGBRUNNEN 1
RefseqXP_024040744.10.0transcription factor JUNGBRUNNEN 1
SwissprotQ9SK553e-82NAC42_ARATH; Transcription factor JUNGBRUNNEN 1
TrEMBLA0A067E6760.0A0A067E676_CITSI; Uncharacterized protein
TrEMBLV4RMF50.0V4RMF5_9ROSI; Uncharacterized protein
STRINGXP_006490488.10.0(Citrus sinensis)
STRINGXP_006422208.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM30628200
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12910.18e-89NAC family protein
Publications ? help Back to Top
  1. Shahnejat-Bushehri S,Nobmann B,Devi Allu A,Balazadeh S
    JUB1 suppresses Pseudomonas syringae-induced defense responses through accumulation of DELLA proteins.
    Plant Signal Behav, 2016. 11(6): p. e1181245
    [PMID:27159137]
  2. Shahnejat-Bushehri S,Tarkowska D,Sakuraba Y,Balazadeh S
    Arabidopsis NAC transcription factor JUB1 regulates GA/BR metabolism and signalling.
    Nat Plants, 2016. 2: p. 16013
    [PMID:27249348]
  3. Shahnejat-Bushehri S, et al.
    Arabidopsis NAC Transcription Factor JUNGBRUNNEN1 Exerts Conserved Control Over Gibberellin and Brassinosteroid Metabolism and Signaling Genes in Tomato.
    Front Plant Sci, 2017. 8: p. 214
    [PMID:28326087]
  4. Sakuraba Y,Bülbül S,Piao W,Choi G,Paek NC
    Arabidopsis EARLY FLOWERING3 increases salt tolerance by suppressing salt stress response pathways.
    Plant J., 2017. 92(6): p. 1106-1120
    [PMID:29032592]
  5. Ebrahimian-Motlagh S, et al.
    JUNGBRUNNEN1 Confers Drought Tolerance Downstream of the HD-Zip I Transcription Factor AtHB13.
    Front Plant Sci, 2017. 8: p. 2118
    [PMID:29326734]