PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ciclev10005455m | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | C3H | ||||||||
Protein Properties | Length: 320aa MW: 34368.2 Da PI: 8.0811 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 27.3 | 6.2e-09 | 2 | 22 | 7 | 27 |
SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 7 rffartGtCkyGdrCkFaHgp 27 ++f++t Ck+G++CkF+H++ Ciclev10005455m 2 QYFLKTQRCKFGSKCKFNHPK 22 59*****************96 PP | |||||||
2 | zf-CCCH | 37.7 | 3.4e-12 | 45 | 69 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C f++++GtCk+G++CkF H++ Ciclev10005455m 45 EPPCAFYLKNGTCKFGATCKFDHPK 69 79*********************96 PP | |||||||
3 | zf-CCCH | 37.4 | 4.3e-12 | 127 | 149 | 5 | 27 |
--SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHgp 27 C+f+++tG CkyG++C+++H++ Ciclev10005455m 127 DCPFYLKTGSCKYGSTCRYNHPE 149 7********************96 PP | |||||||
4 | zf-CCCH | 39.4 | 1e-12 | 211 | 232 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C+++++tG Ck+G++CkF+H+ Ciclev10005455m 211 ECDYYMKTGVCKFGEKCKFHHP 232 7********************8 PP | |||||||
5 | zf-CCCH | 40.5 | 4.5e-13 | 262 | 283 | 6 | 27 |
-SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 6 CrffartGtCkyGdrCkFaHgp 27 C+++++tGtCkyG++CkF H+p Ciclev10005455m 262 CPYYMKTGTCKYGATCKFDHPP 283 ********************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 11.066 | 1 | 23 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.2E-6 | 2 | 22 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 8.3 | 2 | 22 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 3.1E-4 | 3 | 22 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 4.2E-6 | 42 | 69 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.995 | 42 | 70 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.1E-9 | 45 | 69 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.15E-5 | 45 | 70 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 9.6E-5 | 47 | 68 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.018 | 122 | 150 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.0E-5 | 122 | 149 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 7.59E-6 | 127 | 150 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.0E-9 | 127 | 149 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 5.9E-5 | 128 | 149 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 5.8E-6 | 206 | 233 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.028 | 206 | 234 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 5.23E-7 | 209 | 234 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 3.5E-10 | 211 | 232 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 9.9E-6 | 212 | 232 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.6E-6 | 256 | 283 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.666 | 256 | 284 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 3.92E-6 | 260 | 283 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 6.3E-6 | 262 | 281 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.0E-10 | 262 | 283 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003723 | Molecular Function | RNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 320 aa Download sequence Send to blast |
MQYFLKTQRC KFGSKCKFNH PKDKLIGSSD SGNGDVSALP ERPSEPPCAF YLKNGTCKFG 60 ATCKFDHPKD FQLPSVGQEN GIGEQNESVI KTDETTGLLN PGMSLFSHAP AMLHNSKGLP 120 IRPGELDCPF YLKTGSCKYG STCRYNHPER TAINPPAAAI VHPLITSPAA SLGISVVSPA 180 ASLYQTIDPR LAQATLGVSP SLYPQRPGQM ECDYYMKTGV CKFGEKCKFH HPIDRSAAKT 240 PSQETVKLTL AGLPRREGAV HCPYYMKTGT CKYGATCKFD HPPPGEVMAI SALDGTSTAV 300 GEEVKGDEKE SEVAPSTAV* |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Highly expressed in inflorescences, at intermediate levels in leaves and stems and at lower levels in roots. {ECO:0000269|PubMed:11595801}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in flower development (PubMed:11595801, PubMed:12530963). Functions in floral reproductive organ identity by binding AGAMOUS (AG) pre-mRNA and promoting its processing. Functions in association with HUA2 and HEN4 (PubMed:12530963). {ECO:0000269|PubMed:11595801, ECO:0000269|PubMed:12530963}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006422325.2 | 0.0 | zinc finger CCCH domain-containing protein 37 isoform X1 | ||||
Refseq | XP_006493722.1 | 0.0 | zinc finger CCCH domain-containing protein 37 isoform X1 | ||||
Refseq | XP_006493723.1 | 0.0 | zinc finger CCCH domain-containing protein 37 isoform X2 | ||||
Refseq | XP_024047902.1 | 0.0 | zinc finger CCCH domain-containing protein 37 isoform X2 | ||||
Swissprot | Q941Q3 | 1e-125 | C3H37_ARATH; Zinc finger CCCH domain-containing protein 37 | ||||
TrEMBL | A0A067F2C4 | 0.0 | A0A067F2C4_CITSI; Uncharacterized protein | ||||
TrEMBL | A0A2H5NQS5 | 0.0 | A0A2H5NQS5_CITUN; Uncharacterized protein | ||||
STRING | XP_006493722.1 | 0.0 | (Citrus sinensis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G12680.1 | 1e-127 | floral homeotic protein (HUA1) |
Link Out ? help Back to Top | |
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Phytozome | Ciclev10005455m |