PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ciclev10005253m | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | C3H | ||||||||
Protein Properties | Length: 360aa MW: 39108.8 Da PI: 8.3693 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 35.4 | 1.9e-11 | 97 | 123 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ C++f++t Ck+G++CkF+H++ Ciclev10005253m 97 PGEPDCPYFLKTQRCKFGSKCKFNHPK 123 5789*********************96 PP | |||||||
2 | zf-CCCH | 37.5 | 4e-12 | 146 | 170 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C f++++GtCk+G++CkF H++ Ciclev10005253m 146 EPPCAFYLKNGTCKFGATCKFDHPK 170 79*********************96 PP | |||||||
3 | zf-CCCH | 37.2 | 5e-12 | 228 | 250 | 5 | 27 |
--SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHgp 27 C+f+++tG CkyG++C+++H++ Ciclev10005253m 228 DCPFYLKTGSCKYGSTCRYNHPE 250 7********************96 PP | |||||||
4 | zf-CCCH | 39.2 | 1.2e-12 | 312 | 333 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C+++++tG Ck+G++CkF+H+ Ciclev10005253m 312 ECDYYMKTGVCKFGEKCKFHHP 333 7********************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00356 | 9.3E-6 | 96 | 123 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.507 | 96 | 124 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 6.6E-9 | 98 | 123 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 8.9E-6 | 101 | 125 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 4.6E-5 | 102 | 123 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 4.2E-6 | 143 | 170 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.995 | 143 | 171 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.3E-9 | 146 | 170 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.44E-5 | 147 | 171 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.1E-4 | 148 | 169 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.0E-5 | 223 | 250 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.018 | 223 | 251 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.2E-9 | 228 | 250 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 8.9E-6 | 228 | 251 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 6.8E-5 | 229 | 250 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 5.8E-6 | 307 | 334 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.028 | 307 | 335 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 6.15E-7 | 310 | 335 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 4.0E-10 | 312 | 333 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.1E-5 | 313 | 333 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003723 | Molecular Function | RNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 360 aa Download sequence Send to blast |
MVIAQAMELE EEVGPLNHRQ LSPASTHRVH WQTLTIYQSR LFVTTLITPF TIHFGTRAIC 60 PPRLSNLGPL ASIPLTTSND PPKVPVIASS ESLPERPGEP DCPYFLKTQR CKFGSKCKFN 120 HPKDKLIGSS DSGNGDVSAL PERPSEPPCA FYLKNGTCKF GATCKFDHPK DFQLPSVGQE 180 NGIGEQNESV IKTDETTGLL NPGMSLFSHA PAMLHNSKGL PIRPGELDCP FYLKTGSCKY 240 GSTCRYNHPE RTAINPPAAA IVHPLITSPA ASLGISVVSP AASLYQTIDP RLAQATLGVS 300 PSLYPQRPGQ MECDYYMKTG VCKFGEKCKF HHPIDRSAAK TPSQETVKLT LAGLPRREV* |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Highly expressed in inflorescences, at intermediate levels in leaves and stems and at lower levels in roots. {ECO:0000269|PubMed:11595801}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in flower development (PubMed:11595801, PubMed:12530963). Functions in floral reproductive organ identity by binding AGAMOUS (AG) pre-mRNA and promoting its processing. Functions in association with HUA2 and HEN4 (PubMed:12530963). {ECO:0000269|PubMed:11595801, ECO:0000269|PubMed:12530963}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006493723.1 | 0.0 | zinc finger CCCH domain-containing protein 37 isoform X2 | ||||
Refseq | XP_024047902.1 | 0.0 | zinc finger CCCH domain-containing protein 37 isoform X2 | ||||
Swissprot | Q941Q3 | 1e-109 | C3H37_ARATH; Zinc finger CCCH domain-containing protein 37 | ||||
TrEMBL | A0A067F2C4 | 0.0 | A0A067F2C4_CITSI; Uncharacterized protein | ||||
STRING | XP_006493722.1 | 0.0 | (Citrus sinensis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G12680.1 | 1e-111 | floral homeotic protein (HUA1) |
Link Out ? help Back to Top | |
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Phytozome | Ciclev10005253m |