PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10005218m
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family C3H
Protein Properties Length: 368aa    MW: 39675.1 Da    PI: 7.3818
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10005218mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH25.72e-081171026
                     GGTS--TTTTT-SS-SS CS
          zf-CCCH 10 artGtCkyGdrCkFaHg 26
                     ++t tCk+Gd+CkF H+
  Ciclev10005218m  1 MQTRTCKFGDTCKFDHP 17
                     89**************8 PP
2zf-CCCH35.31.9e-114470127
                     --S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHgp 27
                     ++++ C++f++t  Ck+G++CkF+H++
  Ciclev10005218m 44 PGEPDCPYFLKTQRCKFGSKCKFNHPK 70
                     5789*********************96 PP
3zf-CCCH37.44.1e-1293117327
                      S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                      +++C f++++GtCk+G++CkF H++
  Ciclev10005218m  93 EPPCAFYLKNGTCKFGATCKFDHPK 117
                      79*********************96 PP
4zf-CCCH37.15.2e-12175197527
                      --SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   5 lCrffartGtCkyGdrCkFaHgp 27 
                       C+f+++tG CkyG++C+++H++
  Ciclev10005218m 175 DCPFYLKTGSCKYGSTCRYNHPE 197
                      7********************96 PP
5zf-CCCH39.11.2e-12259280526
                      --SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                      +C+++++tG Ck+G++CkF+H+
  Ciclev10005218m 259 ECDYYMKTGVCKFGEKCKFHHP 280
                      7********************8 PP
6zf-CCCH40.35.3e-13310331627
                      -SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   6 CrffartGtCkyGdrCkFaHgp 27 
                      C+++++tGtCkyG++CkF H+p
  Ciclev10005218m 310 CPYYMKTGTCKYGATCKFDHPP 331
                      ********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501039.967119IPR000571Zinc finger, CCCH-type
PfamPF006425.4E-6117IPR000571Zinc finger, CCCH-type
SMARTSM0035657218IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.5074371IPR000571Zinc finger, CCCH-type
SMARTSM003569.3E-64370IPR000571Zinc finger, CCCH-type
PfamPF006426.8E-94570IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.94E-64872IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.7E-54970IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.99590118IPR000571Zinc finger, CCCH-type
SMARTSM003564.2E-690117IPR000571Zinc finger, CCCH-type
PfamPF006421.4E-993117IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.57E-594118IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.2E-495116IPR000571Zinc finger, CCCH-type
SMARTSM003561.0E-5170197IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.018170198IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.16E-6175198IPR000571Zinc finger, CCCH-type
PfamPF006421.2E-9175197IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.0E-5176197IPR000571Zinc finger, CCCH-type
SMARTSM003565.8E-6254281IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.028254282IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.28E-7257282IPR000571Zinc finger, CCCH-type
PfamPF006424.2E-10259280IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.2E-5260280IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.666304332IPR000571Zinc finger, CCCH-type
SMARTSM003561.6E-6304331IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.71E-6308331IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.5E-6310329IPR000571Zinc finger, CCCH-type
PfamPF006422.4E-10310331IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 368 aa     Download sequence    Send to blast
MQTRTCKFGD TCKFDHPIWV PEGGIPDWKE VPVIASSESL PERPGEPDCP YFLKTQRCKF  60
GSKCKFNHPK DKLIGSSDSG NGDVSALPER PSEPPCAFYL KNGTCKFGAT CKFDHPKDFQ  120
LPSVGQENGI GEQNESVIKT DETTGLLNPG MSLFSHAPAM LHNSKGLPIR PGELDCPFYL  180
KTGSCKYGST CRYNHPERTA INPPAAAIVH PLITSPAASL GISVVSPAAS LYQTIDPRLA  240
QATLGVSPSL YPQRPGQMEC DYYMKTGVCK FGEKCKFHHP IDRSAAKTPS QETVKLTLAG  300
LPRREGAVHC PYYMKTGTCK YGATCKFDHP PPGEVMAISA LDGTSTAVGE EVKGDEKESE  360
VAPSTAV*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Highly expressed in inflorescences, at intermediate levels in leaves and stems and at lower levels in roots. {ECO:0000269|PubMed:11595801}.
Functional Description ? help Back to Top
Source Description
UniProtInvolved in flower development (PubMed:11595801, PubMed:12530963). Functions in floral reproductive organ identity by binding AGAMOUS (AG) pre-mRNA and promoting its processing. Functions in association with HUA2 and HEN4 (PubMed:12530963). {ECO:0000269|PubMed:11595801, ECO:0000269|PubMed:12530963}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818007e-32LN681800.1 Cucumis melo genomic scaffold, anchoredscaffold00017.
GenBankLN7132557e-32LN713255.1 Cucumis melo genomic chromosome, chr_1.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006422325.20.0zinc finger CCCH domain-containing protein 37 isoform X1
RefseqXP_006493722.10.0zinc finger CCCH domain-containing protein 37 isoform X1
SwissprotQ941Q31e-160C3H37_ARATH; Zinc finger CCCH domain-containing protein 37
TrEMBLA0A067F2C40.0A0A067F2C4_CITSI; Uncharacterized protein
STRINGXP_006493722.10.0(Citrus sinensis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12680.11e-162floral homeotic protein (HUA1)