PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10005165m
Common NameCICLE_v10005165mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family WRKY
Protein Properties Length: 382aa    MW: 42156.5 Da    PI: 5.6385
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10005165mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY91.28.1e-29135196159
                      ---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                      ldDg++WrKYGqK++ g+++pr+YYrCt++   gC ++k+v+rs+edp+++eitY+g+H++ 
  Ciclev10005165m 135 LDDGCSWRKYGQKDILGAKYPRGYYRCTYRngqGCLATKQVQRSDEDPTIFEITYRGNHTCA 196
                      58***************************99999**************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081122.297130193IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.3E-28132197IPR003657WRKY domain
SuperFamilySSF1182901.96E-25134197IPR003657WRKY domain
SMARTSM007744.2E-41135197IPR003657WRKY domain
PfamPF031066.1E-27136195IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 382 aa     Download sequence    Send to blast
MDRNMGEWEK NSLINVLLQG RESAKQLQIQ LNLRTSSSSH DQTRGIMLVQ KIISSYEKAL  60
SMLNFCGSSS STQEPQPPVG PVTESPTSLT GSPLSEDSDR DVKDPQEDVS KKRKTFPRWT  120
HKVRVNPGAG LEGPLDDGCS WRKYGQKDIL GAKYPRGYYR CTYRNGQGCL ATKQVQRSDE  180
DPTIFEITYR GNHTCAQASN AILPPPTQPE TKEPDTAAIE PQQHNYYQTT PQQQPEDALL  240
NLRKGLKIVT EDLDVKPQQQ SSIPPFHFPS PSVVIHPNFT GNFSPSFVSP QASEANNYTF  300
STSPPSGMNN FQGNQNFQSS SQDSEVNEII SGAAAAAATS ATNPPTVDLD FPFGNIEFDP  360
NFTFDNLGFF SSFHHSEKNS K*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A3e-19135195868OsWRKY45
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006422120.10.0probable WRKY transcription factor 53 isoform X2
RefseqXP_006490571.10.0probable WRKY transcription factor 53 isoform X2
SwissprotQ8H0Y84e-60WRK41_ARATH; Probable WRKY transcription factor 41
TrEMBLV4S9480.0V4S948_9ROSI; Uncharacterized protein
STRINGXP_006422120.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM19332783
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11070.15e-62WRKY family protein
Publications ? help Back to Top
  1. Duan S, et al.
    Functional characterization of a heterologously expressed Brassica napus WRKY41-1 transcription factor in regulating anthocyanin biosynthesis in Arabidopsis thaliana.
    Plant Sci., 2018. 268: p. 47-53
    [PMID:29362083]