PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10005144m
Common NameCICLE_v10005144mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family NF-YA
Protein Properties Length: 389aa    MW: 42982.7 Da    PI: 9.5457
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10005144mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA102.24.9e-32173229158
        CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                      +ep+YVNaKQy++Il+RRq Rak+e e+kl +k rkpylheSRh hA+rR+Rg+gGrF
  Ciclev10005144m 173 EEPVYVNAKQYHGILRRRQLRAKAELERKL-IKVRKPYLHESRHLHAMRRARGCGGRF 229
                      69****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005211.6E-36171232IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115237.491172232IPR001289Nuclear transcription factor Y subunit A
PfamPF020454.4E-27174229IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006161.6E-23175197IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860177197IPR018362CCAAT-binding factor, conserved site
PRINTSPR006161.6E-23206229IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 389 aa     Download sequence    Send to blast
MHQNKSSNSS GPEANSNNSF TISSQPWWRG VGHDSTSRAM LRGGIGNISS PREPINGVLV  60
AKTSKSQVNS GMDGGADATK EMLMSVASQA DGKFGGQQPS QHSVSLMHPQ FSEYLTQPSQ  120
LELVGHSIAC ASYPYSDSYY GGAVPAYGQQ ALVHPQSIGV HSARMALPLE MAEEPVYVNA  180
KQYHGILRRR QLRAKAELER KLIKVRKPYL HESRHLHAMR RARGCGGRFV NTKKLDSQTS  240
NGTVTNGTSS NVAVSTLPPN SSSSESVATN YSRGTADSST GCREVTEPQV HKMQQQQRCS  300
NGNGQTYYEG NGNGCYSHHQ GFQLFKYHSL PDNKVEEGDF SRQQRSRHEL ESLTLYRLER  360
DRPRYVFLLF GLQANHSWLG FDYIHRSE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A3e-20173237266NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024044821.10.0nuclear transcription factor Y subunit A-1 isoform X1
RefseqXP_024044824.10.0nuclear transcription factor Y subunit A-1 isoform X1
TrEMBLV4U6250.0V4U625_9ROSI; Uncharacterized protein
STRINGXP_006421429.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM156021015
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12840.41e-50nuclear factor Y, subunit A1