PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Ciclev10005087m

Common Name

CICLE_v10005087mg

Organism

Citrus clementina

Taxonomic ID

85681

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

bHLH

Protein Properties

Length: 406aa MW: 44784.4 Da PI: 6.8268

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Ciclev10005087m	genome	ICGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	26.1	1.5e-08	248	295	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++iN ++ L+el+P + +k a +L + +++++sLq Ciclev10005087m 248 SHSLAERARREKINARMKLLQELVPGC----NKISGTALVLDEIINHVQSLQ 295 8*************************9....888999999999999999998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	4.45E-15	242	313	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.66E-8	242	299	No hit	No description
Gene3D	G3DSA:4.10.280.10	1.3E-14	244	312	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	14.519	244	294	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	4.9E-6	248	295	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	2.9E-8	250	300	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 406 aa Download sequence Send to blast
MEPTEHRSSA IGPSLDQNAL DSLQFNEEIQ HLMTLPPENA NSFTALLELP APQAVELLHH 60 HHHRSPESNC STAKLVTAKA DGHGLHHPHA TPHHFNPGAN LTFPSDISLI ERAVRFSVFA 120 GINNSDNNHN DNNNNNHKIS SKIDKNNNNN NCSPETTGSV PSNSSGNLGK VKNEPAESDS 180 DNNNPNSPQP LDIKTENQNQ KSAKRKEREK KGKAATKKSK SGANDSSEDA EKLPYVHVRA 240 RRGQATDSHS LAERARREKI NARMKLLQEL VPGCNKISGT ALVLDEIINH VQSLQRQVEF 300 LSMRLAAVNP RIDFNLDSLF VAESGSLIDS SFPGMVMPVM WPELQAHGNR QQYQQQWHHF 360 DGHHQPLLGG AEESHNFVTP ENSLLSYDSS ANSATLHTNQ LKMEL*

Sequence ? help Back to Top

Protein Sequence Length: 406 aa Download sequence Send to blast

MEPTEHRSSA IGPSLDQNAL DSLQFNEEIQ HLMTLPPENA NSFTALLELP APQAVELLHH  60
HHHRSPESNC STAKLVTAKA DGHGLHHPHA TPHHFNPGAN LTFPSDISLI ERAVRFSVFA  120
GINNSDNNHN DNNNNNHKIS SKIDKNNNNN NCSPETTGSV PSNSSGNLGK VKNEPAESDS  180
DNNNPNSPQP LDIKTENQNQ KSAKRKEREK KGKAATKKSK SGANDSSEDA EKLPYVHVRA  240
RRGQATDSHS LAERARREKI NARMKLLQEL VPGCNKISGT ALVLDEIINH VQSLQRQVEF  300
LSMRLAAVNP RIDFNLDSLF VAESGSLIDS SFPGMVMPVM WPELQAHGNR QQYQQQWHHF  360
DGHHQPLLGG AEESHNFVTP ENSLLSYDSS ANSATLHTNQ LKMEL*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006421482.1	0.0	transcription factor bHLH48 isoform X1
TrEMBL	V4S353	0.0	V4S353_9ROSI; Uncharacterized protein
STRING	XP_006421482.1	0.0	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2576	27	71

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G57800.2	2e-93	bHLH family protein

Link Out ? help Back to Top
Phytozome	Ciclev10005087m
Entrez Gene	18031527