PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10005078m
Common NameCICLE_v10005080mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family bZIP
Protein Properties Length: 411aa    MW: 45542.9 Da    PI: 7.8528
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10005078mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_131.93e-10125165545
                      CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
           bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaL 45 
                      k  rr+++NReAAr+sR+RKka++++Le    +L++  ++L
  Ciclev10005078m 125 KTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQEL 165
                      788*************************9777777666555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1701.1E-7114168No hitNo description
SMARTSM003382.7E-9121184IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.415123167IPR004827Basic-leucine zipper domain
PfamPF001702.3E-7125165IPR004827Basic-leucine zipper domain
CDDcd147082.41E-21125177No hitNo description
SuperFamilySSF579596.0E-7125168No hitNo description
PROSITE patternPS000360128143IPR004827Basic-leucine zipper domain
PfamPF141449.0E-31207282IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 411 aa     Download sequence    Send to blast
MENAVDLSRN SVFYQMKTGN QAVGTDVQFG TLSKTLASSD INLSSHIVGS QSMPLQKEPQ  60
SNLISVSSGH RENWGESNMA EASPITDTST DDTEDKNQRF ERGQLTAVAA SDSSDKSKEK  120
SGDQKTLRRL AQNREAARKS RLRKKAYVQQ LESSRLKLTQ LEQELQRARQ QGIFISSSGD  180
QSHSMSGNGA AAFDVEYSRW LEEHNRHIVE LRAAVNSHAG DTELRTIVDN VTSHFDEIFR  240
LKGIASKADV FHILSGMWKT PAERCFMWIG GFRSSELLKL LVNQLEPLTE QQLVGIYNLQ  300
QSSQQAEDAL SQGMDALQQS LAETLANGSP SPSGTSGNVA NYMGQMAMAM GKLGTLEGFL  360
RQADNLRQQT LQQMHRILTT RQSARALLAI NDYFSRLRAL SSLWLARPRE *
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006421096.10.0transcription factor HBP-1b(c38)
RefseqXP_006421097.10.0transcription factor HBP-1b(c38)
RefseqXP_006477494.10.0transcription factor HBP-1b(c38)
RefseqXP_024954454.10.0transcription factor HBP-1b(c38)
SwissprotO241600.0TGA21_TOBAC; TGACG-sequence-specific DNA-binding protein TGA-2.1
TrEMBLA0A067E0Z90.0A0A067E0Z9_CITSI; Uncharacterized protein
TrEMBLV4S6820.0V4S682_9ROSI; Uncharacterized protein
STRINGXP_006477494.10.0(Citrus sinensis)
STRINGXP_006421095.10.0(Citrus clementina)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12250.21e-138TGACG motif-binding factor 6