PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10005041m
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family C3H
Protein Properties Length: 421aa    MW: 45411.8 Da    PI: 7.7693
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10005041mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH35.12.3e-1197123127
                      --S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                      ++++ C++f++t  Ck+G++CkF+H++
  Ciclev10005041m  97 PGEPDCPYFLKTQRCKFGSKCKFNHPK 123
                      5789*********************96 PP
2zf-CCCH37.24.9e-12146170327
                      S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                      +++C f++++GtCk+G++CkF H++
  Ciclev10005041m 146 EPPCAFYLKNGTCKFGATCKFDHPK 170
                      79*********************96 PP
3zf-CCCH36.96.1e-12228250527
                      --SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   5 lCrffartGtCkyGdrCkFaHgp 27 
                       C+f+++tG CkyG++C+++H++
  Ciclev10005041m 228 DCPFYLKTGSCKYGSTCRYNHPE 250
                      7********************96 PP
4zf-CCCH38.91.4e-12312333526
                      --SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                      +C+++++tG Ck+G++CkF+H+
  Ciclev10005041m 312 ECDYYMKTGVCKFGEKCKFHHP 333
                      7********************8 PP
5zf-CCCH406.3e-13363384627
                      -SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   6 CrffartGtCkyGdrCkFaHgp 27 
                      C+++++tGtCkyG++CkF H+p
  Ciclev10005041m 363 CPYYMKTGTCKYGATCKFDHPP 384
                      ********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010315.50796124IPR000571Zinc finger, CCCH-type
SMARTSM003569.3E-696123IPR000571Zinc finger, CCCH-type
PfamPF006428.0E-998123IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.19E-5101125IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.5E-5102123IPR000571Zinc finger, CCCH-type
SMARTSM003564.2E-6143170IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.995143171IPR000571Zinc finger, CCCH-type
PfamPF006421.6E-9146170IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.83E-5147171IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.4E-4148169IPR000571Zinc finger, CCCH-type
SMARTSM003561.0E-5223250IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.018223251IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.1E-5228251IPR000571Zinc finger, CCCH-type
PfamPF006421.4E-9228250IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.3E-5229250IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.028307335IPR000571Zinc finger, CCCH-type
SMARTSM003565.8E-6307334IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.46E-7310335IPR000571Zinc finger, CCCH-type
PfamPF006424.9E-10312333IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.4E-5313333IPR000571Zinc finger, CCCH-type
SMARTSM003561.6E-6357384IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.666357385IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.63E-6361384IPR000571Zinc finger, CCCH-type
PfamPF006422.8E-10363384IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.8E-6363382IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 421 aa     Download sequence    Send to blast
MVIAQAMELE EEVGPLNHRQ LSPASTHRVH WQTLTIYQSR LFVTTLITPF TIHFGTRAIC  60
PPRLSNLGPL ASIPLTTSND PPKVPVIASS ESLPERPGEP DCPYFLKTQR CKFGSKCKFN  120
HPKDKLIGSS DSGNGDVSAL PERPSEPPCA FYLKNGTCKF GATCKFDHPK DFQLPSVGQE  180
NGIGEQNESV IKTDETTGLL NPGMSLFSHA PAMLHNSKGL PIRPGELDCP FYLKTGSCKY  240
GSTCRYNHPE RTAINPPAAA IVHPLITSPA ASLGISVVSP AASLYQTIDP RLAQATLGVS  300
PSLYPQRPGQ MECDYYMKTG VCKFGEKCKF HHPIDRSAAK TPSQETVKLT LAGLPRREGA  360
VHCPYYMKTG TCKYGATCKF DHPPPGEVMA ISALDGTSTA VGEEVKGDEK ESEVAPSTAV  420
*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Highly expressed in inflorescences, at intermediate levels in leaves and stems and at lower levels in roots. {ECO:0000269|PubMed:11595801}.
Functional Description ? help Back to Top
Source Description
UniProtInvolved in flower development (PubMed:11595801, PubMed:12530963). Functions in floral reproductive organ identity by binding AGAMOUS (AG) pre-mRNA and promoting its processing. Functions in association with HUA2 and HEN4 (PubMed:12530963). {ECO:0000269|PubMed:11595801, ECO:0000269|PubMed:12530963}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006493723.10.0zinc finger CCCH domain-containing protein 37 isoform X2
RefseqXP_024047902.10.0zinc finger CCCH domain-containing protein 37 isoform X2
SwissprotQ941Q31e-134C3H37_ARATH; Zinc finger CCCH domain-containing protein 37
TrEMBLA0A067F2C40.0A0A067F2C4_CITSI; Uncharacterized protein
STRINGXP_006493722.10.0(Citrus sinensis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12680.11e-136floral homeotic protein (HUA1)