PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10005012m
Common NameCICLE_v10005012mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family AP2
Protein Properties Length: 430aa    MW: 47571.1 Da    PI: 9.3909
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10005012mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.13.9e-1771130155
              AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng...kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                      s y+GV++++++gr++A+++d  ++n+   k+ k+++lg ++ +e Aa+a++ a++k++g
  Ciclev10005012m  71 SIYRGVTRHRWTGRYEAHLWDkSTWNQnqnKKgKQVYLGAYDDEEAAARAYDLAALKYWG 130
                      57*******************766644468557*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008476.5E-1371130IPR001471AP2/ERF domain
SuperFamilySSF541714.58E-1771139IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.8E-1572139IPR001471AP2/ERF domain
PROSITE profilePS5103220.12672138IPR001471AP2/ERF domain
SMARTSM003801.9E-2572144IPR001471AP2/ERF domain
PRINTSPR003674.3E-57384IPR001471AP2/ERF domain
PRINTSPR003674.3E-5120140IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 430 aa     Download sequence    Send to blast
MMASSSSDPG LKHEVGSSSG CGGGGESSEA VIANDQLLLY RGLKKAKKER GCTAKERISR  60
MPPCTAGKRS SIYRGVTRHR WTGRYEAHLW DKSTWNQNQN KKGKQVYLGA YDDEEAAARA  120
YDLAALKYWG PGTLINFPVT DYTRDLEEMQ NVSREDYLAS LRRKSSGFSR GISKYRGLSS  180
RWDSSLARMA GSEYFNNAHY GAADDPSTES EYLGGFCIDR KIDLTSYIKW WGPNKTRQAD  240
SAKKSLEEGK HAYAEDISSE LKKSEWEIRP TEPYQMPRLG VSPGGKKHKG SAVSALSILS  300
KSTAYKNFQE KALKKQDSNT DNDENENKNI VNKMDYGKAV EKSTGHDGRS ERLGAALGMT  360
GGLSLQRNAF PLAPFLSAPL LTNYNTIDPL VDPILWSSLV PALPTGLPRN SEVTKTESSS  420
TYTFFRPEE*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006421325.10.0AP2-like ethylene-responsive transcription factor At2g41710
SwissprotQ8GWK21e-172AP2L4_ARATH; AP2-like ethylene-responsive transcription factor At2g41710
TrEMBLV4S6S80.0V4S6S8_9ROSI; Uncharacterized protein
STRINGXP_006421325.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM108152433
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41710.11e-162AP2 family protein