PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10004960m
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family C3H
Protein Properties Length: 448aa    MW: 48752.9 Da    PI: 7.9292
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10004960mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH36.77e-12134158226
                      -S---SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                      +++ C ++++t tCk+Gd+CkF H+
  Ciclev10004960m 134 GEKDCAYYMQTRTCKFGDTCKFDHP 158
                      7889********************8 PP
2zf-CCCH352.4e-11185211127
                      --S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                      ++++ C++f++t  Ck+G++CkF+H++
  Ciclev10004960m 185 PGEPDCPYFLKTQRCKFGSKCKFNHPK 211
                      5789*********************96 PP
3zf-CCCH37.15.3e-12234258327
                      S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                      +++C f++++GtCk+G++CkF H++
  Ciclev10004960m 234 EPPCAFYLKNGTCKFGATCKFDHPK 258
                      79*********************96 PP
4zf-CCCH36.86.6e-12316338527
                      --SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   5 lCrffartGtCkyGdrCkFaHgp 27 
                       C+f+++tG CkyG++C+++H++
  Ciclev10004960m 316 DCPFYLKTGSCKYGSTCRYNHPE 338
                      7********************96 PP
5zf-CCCH38.81.5e-12400421526
                      --SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                      +C+++++tG Ck+G++CkF+H+
  Ciclev10004960m 400 ECDYYMKTGVCKFGEKCKFHHP 421
                      7********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003568.3E-4132159IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.394132160IPR000571Zinc finger, CCCH-type
PfamPF006421.5E-9134158IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.31E-5134159IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.2E-4138157IPR000571Zinc finger, CCCH-type
SMARTSM003569.3E-6184211IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.507184212IPR000571Zinc finger, CCCH-type
PfamPF006428.7E-9186211IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.28E-5189213IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.9E-5190211IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.995231259IPR000571Zinc finger, CCCH-type
SMARTSM003564.2E-6231258IPR000571Zinc finger, CCCH-type
PfamPF006421.7E-9234258IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.96E-5235259IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.5E-4236257IPR000571Zinc finger, CCCH-type
SMARTSM003561.0E-5311338IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.018311339IPR000571Zinc finger, CCCH-type
PfamPF006421.5E-9316338IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.19E-5316339IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.9E-5317338IPR000571Zinc finger, CCCH-type
SMARTSM003565.8E-6395422IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.028395423IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.11E-7398423IPR000571Zinc finger, CCCH-type
PfamPF006425.3E-10400421IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.5E-5401421IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 448 aa     Download sequence    Send to blast
MANHLYGYSS SYGAGGGGGT PKSSAALSGV YTSRSLADAY HLSESTLRYD PDHSIYDSFR  60
YSGYLSSQAQ QPWPPGVDPT DHLKRPSEAL YHPTLLGTHT SIGQSEAWYS TNSLAKRPRI  120
ESASNLPVYP QRPGEKDCAY YMQTRTCKFG DTCKFDHPIW VPEGGIPDWK EVPVIASSES  180
LPERPGEPDC PYFLKTQRCK FGSKCKFNHP KDKLIGSSDS GNGDVSALPE RPSEPPCAFY  240
LKNGTCKFGA TCKFDHPKDF QLPSVGQENG IGEQNESVIK TDETTGLLNP GMSLFSHAPA  300
MLHNSKGLPI RPGELDCPFY LKTGSCKYGS TCRYNHPERT AINPPAAAIV HPLITSPAAS  360
LGISVVSPAA SLYQTIDPRL AQATLGVSPS LYPQRPGQME CDYYMKTGVC KFGEKCKFHH  420
PIDRSAAKTP SQETVKLTLA GLPRREV*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Highly expressed in inflorescences, at intermediate levels in leaves and stems and at lower levels in roots. {ECO:0000269|PubMed:11595801}.
Functional Description ? help Back to Top
Source Description
UniProtInvolved in flower development (PubMed:11595801, PubMed:12530963). Functions in floral reproductive organ identity by binding AGAMOUS (AG) pre-mRNA and promoting its processing. Functions in association with HUA2 and HEN4 (PubMed:12530963). {ECO:0000269|PubMed:11595801, ECO:0000269|PubMed:12530963}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818001e-64LN681800.1 Cucumis melo genomic scaffold, anchoredscaffold00017.
GenBankLN7132551e-64LN713255.1 Cucumis melo genomic chromosome, chr_1.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006422325.20.0zinc finger CCCH domain-containing protein 37 isoform X1
RefseqXP_006493722.10.0zinc finger CCCH domain-containing protein 37 isoform X1
SwissprotQ941Q31e-169C3H37_ARATH; Zinc finger CCCH domain-containing protein 37
TrEMBLA0A067F2C40.0A0A067F2C4_CITSI; Uncharacterized protein
STRINGXP_006493722.10.0(Citrus sinensis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12680.11e-172floral homeotic protein (HUA1)