PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10004502m
Common NameCICLE_v10004502mg
Organism
Citrus clementina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family GRAS
Protein Properties Length: 660aa    MW: 72990 Da    PI: 6.9078
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10004502mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS359.35.5e-1102856592374
             GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 
                      +++++e+A+avs+g+   a+++L+rls+  +++g++ qRl  ++  AL++r++       +  +p + +e   +e++ +++l+++ sP++ +++
  Ciclev10004502m 285 KQTVIEAATAVSEGKYDVASEILTRLSQATNSKGNSEQRLMEHMCSALKSRVNP------HE-NPPPVAELFGKEHAESTQLLYDFSPCFSLGF 371
                      57899************************************************9......22.33333334599******************** PP

             GRAS  96 ltaNqaIleavege........ervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesgskeeleetgerLakfAeelgvpfefnv 180
                      ++aN aIlea+ ++        +++H+iDfdi+qG+Q+++L++aL++R +g+p  +++T+v++  + s+e+l++++++L+++Ae++gv ++fnv
  Ciclev10004502m 372 MAANLAILEATMEQttgntigsNKIHVIDFDIGQGGQYMNLFHALSARLNGKPaIVKVTAVAD-GTASEEKLKAVRDKLSQVAERVGVCLRFNV 464
                      **********988778878888999************************7777699*******.567*************************** PP

             GRAS 181 lvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleak 274
                       ++ +++dl+ ++L ++p+E+laVn++++l+r++desvs+e++rde+L+ vk+lsP vv++veqe+++n+++F++r+ ea+ yy alfds+e++
  Ciclev10004502m 465 AICLKFDDLSRDSLGCEPDETLAVNFAFKLFRMPDESVSTENPRDELLRRVKGLSPSVVTLVEQETNTNTAPFMARVNEACAYYGALFDSIEST 558
                      9999****************************************************************************************** PP

             GRAS 275 lpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk..sdgyrveeesgslvlgWkdrp 366
                      + r++++r+kvE+  l+r++ n vaceg++r+er+e ++kWr+r+++aGF+  p+s+ +a+++++ l+  +  + g++v+ee+g +++gW++r+
  Ciclev10004502m 559 VLRDHSDRVKVEEG-LSRKLANSVACEGRDRVERCEVFGKWRARMRMAGFELKPMSQIIAESMRTRLSSGNrvNPGFTVKEENGGICFGWMGRT 651
                      **************.*************************************************99988776789******************* PP

             GRAS 367 LvsvSaWr 374
                      L++vSaWr
  Ciclev10004502m 652 LTVVSAWR 659
                      *******8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098546.594258637IPR005202Transcription factor GRAS
PfamPF035141.9E-107285659IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
Sequence ? help Back to Top
Protein Sequence    Length: 660 aa     Download sequence    Send to blast
MSSGFPGGGG GGPDLYSGLA AGGRSITMNG NQLSHQPSYR SSQLPGIFMD QMTSSPQIAN  60
RNLIGKRTFN DYQITHHHHQ QQQQLFQQNH INPAMNSLFL RSVKPRTYQN LSPISPLDFS  120
PNNINNNNNN VLPPDLQQSL PLSHRYNLPL LQQQLQQQQQ PRLYQQHQQQ QHVALVSNTI  180
PYVDNNNTVP SYNNRVQVQG QESEKKMLNR LQELEKQLLD DEEEGDDVSV ITNTNSEWSE  240
TIQNLITFSP KQTVSSIRPL APSPTTSSSS CSSSSVASPA TSCSKQTVIE AATAVSEGKY  300
DVASEILTRL SQATNSKGNS EQRLMEHMCS ALKSRVNPHE NPPPVAELFG KEHAESTQLL  360
YDFSPCFSLG FMAANLAILE ATMEQTTGNT IGSNKIHVID FDIGQGGQYM NLFHALSARL  420
NGKPAIVKVT AVADGTASEE KLKAVRDKLS QVAERVGVCL RFNVAICLKF DDLSRDSLGC  480
EPDETLAVNF AFKLFRMPDE SVSTENPRDE LLRRVKGLSP SVVTLVEQET NTNTAPFMAR  540
VNEACAYYGA LFDSIESTVL RDHSDRVKVE EGLSRKLANS VACEGRDRVE RCEVFGKWRA  600
RMRMAGFELK PMSQIIAESM RTRLSSGNRV NPGFTVKEEN GGICFGWMGR TLTVVSAWR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A3e-4328265910375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ccl.32090.0fruit
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedlings, roots, leaves and siliques. {ECO:0000269|PubMed:10341448, ECO:0000269|PubMed:18500650}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006421997.10.0scarecrow-like protein 8
SwissprotQ9FYR70.0SCL8_ARATH; Scarecrow-like protein 8
TrEMBLV4S4H50.0V4S4H5_9ROSI; Uncharacterized protein
STRINGXP_006421997.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM43502856
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52510.11e-171SCARECROW-like 8