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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
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| TF ID | Ciclev10004471m | ||||||||
| Common Name | CICLE_v10004470mg | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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| Family | ARR-B | ||||||||
| Protein Properties | Length: 680aa MW: 73829.8 Da PI: 6.088 | ||||||||
| Description | ARR-B family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | G2-like | 91.7 | 6.1e-29 | 207 | 260 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
kpr++W+ eLH++Fv+av+qL G++kA+Pk+ilelm+v+gLt+e+v+SHLQkYRl
Ciclev10004471m 207 KPRVVWSVELHQQFVSAVNQL-GIDKAVPKKILELMNVPGLTRENVASHLQKYRL 260
79*******************.********************************8 PP
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| 2 | Response_reg | 74.6 | 3.9e-25 | 29 | 137 | 1 | 109 |
EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHT CS
Response_reg 1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealka 92
vl+vdD+p+ +++l+++l y ev+ + +e al++l++++ +D+++ D+ mp+mdG++ll++ e +lp+i+++a ++++ + + +
Ciclev10004471m 29 VLVVDDDPTCLRILEKMLGTCLY-EVTKCNRAEIALDMLRTNKngYDIVISDVHMPDMDGFKLLEQVGLEM-DLPVIMMSADDSKQVVMKGVTH 120
89*********************.***************998889**********************6644.8********************* PP
TESEEEESS--HHHHHH CS
Response_reg 93 GakdflsKpfdpeelvk 109
Ga d+l Kp+ +e+l +
Ciclev10004471m 121 GACDYLIKPVRIEALKN 137
*************9986 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| PIRSF | PIRSF036392 | 4.4E-175 | 2 | 671 | IPR017053 | Response regulator B-type, plant |
| SuperFamily | SSF52172 | 2.42E-34 | 26 | 150 | IPR011006 | CheY-like superfamily |
| Gene3D | G3DSA:3.40.50.2300 | 1.3E-41 | 26 | 171 | No hit | No description |
| SMART | SM00448 | 6.6E-30 | 27 | 139 | IPR001789 | Signal transduction response regulator, receiver domain |
| PROSITE profile | PS50110 | 42.372 | 28 | 143 | IPR001789 | Signal transduction response regulator, receiver domain |
| Pfam | PF00072 | 1.3E-22 | 29 | 137 | IPR001789 | Signal transduction response regulator, receiver domain |
| CDD | cd00156 | 4.04E-27 | 30 | 142 | No hit | No description |
| SuperFamily | SSF46689 | 4.3E-20 | 204 | 264 | IPR009057 | Homeodomain-like |
| PROSITE profile | PS51294 | 10.732 | 204 | 263 | IPR017930 | Myb domain |
| Gene3D | G3DSA:1.10.10.60 | 2.2E-30 | 206 | 265 | IPR009057 | Homeodomain-like |
| TIGRFAMs | TIGR01557 | 8.0E-25 | 207 | 260 | IPR006447 | Myb domain, plants |
| Pfam | PF00249 | 6.2E-8 | 209 | 259 | IPR001005 | SANT/Myb domain |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
| GO:0009873 | Biological Process | ethylene-activated signaling pathway | ||||
| GO:0010082 | Biological Process | regulation of root meristem growth | ||||
| GO:0010119 | Biological Process | regulation of stomatal movement | ||||
| GO:0010150 | Biological Process | leaf senescence | ||||
| GO:0071368 | Biological Process | cellular response to cytokinin stimulus | ||||
| GO:0080113 | Biological Process | regulation of seed growth | ||||
| GO:0005634 | Cellular Component | nucleus | ||||
| GO:0003677 | Molecular Function | DNA binding | ||||
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
| Sequence ? help Back to Top |
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| Protein Sequence Length: 680 aa Download sequence Send to blast |
MNLNNDKGSM STASSSVTVS DQFPAGLRVL VVDDDPTCLR ILEKMLGTCL YEVTKCNRAE 60 IALDMLRTNK NGYDIVISDV HMPDMDGFKL LEQVGLEMDL PVIMMSADDS KQVVMKGVTH 120 GACDYLIKPV RIEALKNIWQ HVVRKRKNEW KDLEQSGSVE EGDRQPKPSE EADYSSSANE 180 GNWRTSKRRK DEEEEMEERD DTSTLKKPRV VWSVELHQQF VSAVNQLGID KAVPKKILEL 240 MNVPGLTREN VASHLQKYRL YLRRLSGVSP HQGNSFISSH SQEPPYGSLS SLSGLDFQTL 300 AATGQIPAQS LATLQAAGLA RSAAKPGLPM PLVDQRNIFS FDNQKLRFGE GQPQHMSSGK 360 QMNLLHGIPT TMDSKQLVNL HHSAQSLGSL NMQASAHGNP SGQSSPLLMQ MAQPQSRGQI 420 LTETSGGQVP RLPTSVGHPI LSNGAAGAML ARNGIGENSR GTGYNSVSQT SSVLNFPLNH 480 SAELPGNSFP LGSTPGISAG MSTLTTKGGF QEEINSDIKG SGGFMPSYDI FNDLQQHKPH 540 NWELQNVGFA FDASQHSNSL QASVDVTPSV LVNQGYSSSP RNVQNSNVSA MGKPIFSVGE 600 GSEHGNALNV GQHLNSLLVD NSTRVKSERV TDTSCQPTLL PQHFGQEDLM SAILKQQDGL 660 GPAENDFEFD GYSLDNIPV* |
| 3D Structure ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
| 1irz_A | 5e-22 | 206 | 266 | 4 | 64 | ARR10-B |
| Search in ModeBase | ||||||
| Expression -- UniGene ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| UniGene ID | E-value | Expressed in | ||||
| Ccl.3115 | 0.0 | abscission zone | ||||
| Expression -- Description ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Description | |||||
| Uniprot | TISSUE SPECIFICITY: Detected in the whole plant. Predominantly expressed in pollen. {ECO:0000269|PubMed:11370868, ECO:0000269|PubMed:15173562, ECO:0000269|PubMed:9891419}. | |||||
| Functional Description ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Description | |||||
| UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Could directly activate some type-A response regulators in response to cytokinins. Involved in the expression of nuclear genes for components of mitochondrial complex I. Promotes cytokinin-mediated leaf longevity. Involved in the ethylene signaling pathway in an ETR1-dependent manner and in the cytokinin signaling pathway. {ECO:0000269|PubMed:11370868, ECO:0000269|PubMed:11574878, ECO:0000269|PubMed:15282545, ECO:0000269|PubMed:16407152}. | |||||
| Binding Motif ? help Back to Top | |||
|---|---|---|---|
| Motif ID | Method | Source | Motif file |
| MP00054 | PBM | Transfer from AT4G16110 | Download |
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| Regulation -- PlantRegMap ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | Retrieve | ||||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_006419445.1 | 0.0 | two-component response regulator ARR2 isoform X2 | ||||
| Swissprot | Q9ZWJ9 | 0.0 | ARR2_ARATH; Two-component response regulator ARR2 | ||||
| TrEMBL | V4U0D0 | 0.0 | V4U0D0_9ROSI; Two-component response regulator | ||||
| STRING | XP_006419443.1 | 0.0 | (Citrus clementina) | ||||
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT4G16110.1 | 0.0 | response regulator 2 | ||||
| Link Out ? help Back to Top | |
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| Phytozome | Ciclev10004471m |
| Entrez Gene | 18031346 |
| ©2010-2022, Center
for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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